BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0834000 Os03g0834000|AB080084
(412 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0834000 Flap endonuclease-1b (EC 3.-.-.-) (OsFEN-1b) 849 0.0
Os05g0540100 Flap endonuclease-1a (EC 3.-.-.-) (OsFEN-1a) 510 e-145
Os01g0777300 DNA repair protein (XPGC)/yeast Rad family pro... 105 8e-23
Os03g0205400 Similar to Xeroderma pigmentosum complementati... 80 3e-15
>Os03g0834000 Flap endonuclease-1b (EC 3.-.-.-) (OsFEN-1b)
Length = 412
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/412 (100%), Positives = 412/412 (100%)
Query: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60
MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE
Sbjct: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60
Query: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGD 120
VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGD
Sbjct: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGD 120
Query: 121 EDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASED 180
EDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASED
Sbjct: 121 EDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASED 180
Query: 181 MDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIR 240
MDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIR
Sbjct: 181 MDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIR 240
Query: 241 GIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRALFKEPNVCTDIPDFLWTP 300
GIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRALFKEPNVCTDIPDFLWTP
Sbjct: 241 GIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRALFKEPNVCTDIPDFLWTP 300
Query: 301 PDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGRGKLLAPVANLTGSTSTAGKEP 360
PDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGRGKLLAPVANLTGSTSTAGKEP
Sbjct: 301 PDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGRGKLLAPVANLTGSTSTAGKEP 360
Query: 361 KCILGGPGQVMKARSPLQVCKSSSLNFIHDNSKAFMLGRRSGFLRISTYASI 412
KCILGGPGQVMKARSPLQVCKSSSLNFIHDNSKAFMLGRRSGFLRISTYASI
Sbjct: 361 KCILGGPGQVMKARSPLQVCKSSSLNFIHDNSKAFMLGRRSGFLRISTYASI 412
>Os05g0540100 Flap endonuclease-1a (EC 3.-.-.-) (OsFEN-1a)
Length = 380
Score = 510 bits (1314), Expect = e-145, Method: Compositional matrix adjust.
Identities = 240/339 (70%), Positives = 284/339 (83%)
Query: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60
MGIKGLTKLLA++AP A ++ E Y GR +A+D S+SIYQFLIVVGR G E LTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGD 120
VTSHLQGM NRT+R+LEAGIKPV+VFDG+PPD+KK+ELAKR KR+ ++++L A+E GD
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120
Query: 121 EDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASED 180
+D IEKFSKRTVKVTK+HNE+CKRLL LMGVPVV+AP EAEA+CAALC N V+A+ASED
Sbjct: 121 KDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASED 180
Query: 181 MDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIR 240
MDSLTFGA RFLRHL D S K+ PV EFEV+KVLEEL LTMDQFIDLCILSGCDYC++I+
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIK 240
Query: 241 GIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRALFKEPNVCTDIPDFLWTP 300
GIGGQ ALKLIRQHG IE +++N+++ RY +PEDWPYQE R LFKEPNV DIP+ W
Sbjct: 241 GIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPELKWNA 300
Query: 301 PDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGR 339
PDEEGL+ FL EN F+ DRV K++EKIK A +K S GR
Sbjct: 301 PDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGR 339
>Os01g0777300 DNA repair protein (XPGC)/yeast Rad family protein
Length = 836
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 142/284 (50%), Gaps = 26/284 (9%)
Query: 1 MGIKGL-TKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAG 59
MGI+GL +L + AP VE +G+ VA+DT +++ + G + + L
Sbjct: 1 MGIQGLLPQLKSIMAPIG-----VEALKGQTVAVDTYSWLHKGALSCGDRLCKGLP---- 51
Query: 60 EVTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIE-- 117
T H++ ++R + G+KP+ VFDG MK + KR R E+L RA E
Sbjct: 52 -TTRHIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSR---KENLERAKEHE 107
Query: 118 -VGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAI 176
G+ + ++ V +T + + ++L V + AP EA+AQ L N V A+
Sbjct: 108 SAGNSRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAV 167
Query: 177 ASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKV-----LEELGLTMDQFIDLCILS 231
+ED D + FG R + + K EF ++++ L+ G TM +++CILS
Sbjct: 168 ITEDSDLIPFGCSRIIFKMD----KFGQGVEFHITRLQRCRELDLNGFTMQMLLEMCILS 223
Query: 232 GCDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDW 275
GCDY ++ G+G +RA LI++ E+V+++L + SVP +
Sbjct: 224 GCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQY 267
>Os03g0205400 Similar to Xeroderma pigmentosum complementation group G protein
splice variant
Length = 1470
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 5/119 (4%)
Query: 141 DCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSF 200
+C+ LL + G+P + AP EAEAQCA + + V + ++D D FGAR +++ D
Sbjct: 859 ECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNIFD--- 915
Query: 201 KRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHGYIEE 259
R V + + + ELGLT +Q I + +L G DY E I GIG A+++ H + EE
Sbjct: 916 DRKYVETYLMKDIESELGLTREQLIRMAMLLGSDYTEGISGIGIVNAIEVA--HAFPEE 972
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,568,929
Number of extensions: 555060
Number of successful extensions: 1336
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1335
Number of HSP's successfully gapped: 4
Length of query: 412
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 309
Effective length of database: 11,657,759
Effective search space: 3602247531
Effective search space used: 3602247531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)