Os03g0834000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Flap endonuclease-1b (EC 3.-.-.-) (OsFEN-1b).
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Os03g0834000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Flap endonuclease-1b (EC 3.-.-.-) (OsFEN-1b).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.09 | 0.364 | 10.7 | -0.892 | 0.922 | 0.94 | 0.202 | 2.92 | -0.231 | 21.2 | 29.08 | 114 | -- | -- |
| 67.91 | 0.384 | 10.7 | -0.919 | 0.886 | 0.634 | -0.431 | -- | -0.208 | 21.1 | 26.63 | 127 | -- | -- |
| 60.21 | 0.361 | 10.7 | -0.893 | 0.911 | 0.936 | -- | 2.8 | -0.228 | 21.2 | 29.28 | 127 | -- | -- |
| 68.18 | 0.387 | 10.7 | -0.892 | 0.893 | 0.556 | -- | -- | -0.185 | 20.8 | 27.79 | 69 | -- | -- |
| 102.86 | 0.472 | 10.6 | -0.868 | -- | 0.479 | -- | 2.9 | -0.216 | -- | 40.88 | 267 | -- | -- |
| 73.05 | 0.401 | 10.7 | -0.901 | 0.819 | -- | -0.25 | -- | -0.19 | 20.4 | -- | -- | -- | -- |
| 73.24 | 0.401 | 10.7 | -0.893 | 0.82 | -- | -- | -- | -0.19 | 20.3 | -- | -- | -- | -- |
| 87.07 | 0.435 | 10.6 | -0.923 | -- | 0.841 | -- | -- | -0.267 | -- | -0.2534 | 905 | -- | -- |
| 88.42 | 0.438 | 10.6 | -- | 0.925 | 0.66 | -- | -- | -0.117 | 20.9 | 26.36 | 69 | -- | -- |
| 110.57 | 0.491 | 10.6 | -0.898 | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
| 94.25 | 0.454 | 10.6 | -- | 0.825 | -- | -- | -- | -0.0903 | 20.2 | -- | -- | -- | -- |
| 111.09 | 0.491 | 10.6 | -- | -- | 0.757 | -- | -- | -0.178 | -- | -16.24 | 877 | -- | -- |
| 131.84 | 0.536 | 10.6 | -- | -- | -- | -- | -- | -0.099 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.62 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 3 | 54.95 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 15 | 56.15 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 22 | 56.82 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 70 | 58.20 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 83 | 58.40 | radiation | 1.0 | 30 | > th | dose independent | rect. | 18 | 15 |
| 84 | 58.47 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 86 | 58.49 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 104 | 58.65 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 2 |
| 112 | 58.81 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 5 | 4 |
| 118 | 58.91 | radiation | 1.0 | 90 | < th | dose dependent | sin | 11 | NA |
| 119 | 58.91 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 126 | 58.97 | radiation | 1.0 | 90 | < th | dose independent | sin | 11 | NA |
| 130 | 59.10 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 4 |
| 149 | 59.30 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 152 | 59.32 | temperature | 25.0 | 30 | > th | dose independent | rect. | 9 | 7 |
| 158 | 59.40 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 162 | 59.44 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 22 |
| 187 | 59.55 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 215 | 59.71 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 221 | 59.74 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 235 | 59.76 | radiation | 20.0 | 30 | < th | dose dependent | sin | 11 | NA |
| 244 | 59.76 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 24 | 12 |
| 259 | 59.79 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 268 | 59.85 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 303 | 60.00 | radiation | 30.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 309 | 60.02 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 318 | 60.05 | radiation | 30.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 345 | 60.20 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 352 | 60.23 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 358 | 60.23 | radiation | 30.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 429 | 60.34 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 4 |
| 430 | 60.34 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 431 | 60.34 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 448 | 60.37 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 449 | 60.39 | wind | 5.0 | 30 | < th | dose independent | rect. | 5 | 4 |
| 457 | 60.44 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 18 | 15 |
| 465 | 60.46 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 468 | 60.46 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 469 | 60.46 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 470 | 60.46 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 476 | 60.48 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 5 | 4 |
| 489 | 60.48 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 521 | 60.52 | radiation | 30.0 | 90 | > th | dose dependent | no | NA | NA |
| 698 | 60.56 | radiation | 1.0 | 90 | > th | dose independent | sin | 11 | NA |
| 704 | 60.58 | radiation | 1.0 | 30 | > th | dose independent | rect. | 16 | 17 |
| 733 | 60.60 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 754 | 60.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 5 |
| 755 | 60.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 773 | 60.67 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 915 | 60.80 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 938 | 60.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 2 |
| 941 | 60.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 967 | 60.87 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 975 | 60.89 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 990 | 60.91 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 995 | 60.92 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 3 |