BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0834000 Os03g0834000|AB080084
(412 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G26680.1 | chr5:9311882-9315458 REVERSE LENGTH=454 492 e-139
AT1G29630.2 | chr1:10349587-10353538 FORWARD LENGTH=736 110 2e-24
AT3G28030.1 | chr3:10424321-10431178 FORWARD LENGTH=1480 83 2e-16
AT1G01880.1 | chr1:306558-308991 REVERSE LENGTH=600 82 8e-16
AT1G18090.1 | chr1:6224539-6227715 FORWARD LENGTH=578 65 4e-11
AT3G48900.2 | chr3:18131854-18136239 FORWARD LENGTH=601 59 6e-09
>AT5G26680.1 | chr5:9311882-9315458 REVERSE LENGTH=454
Length = 453
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/351 (67%), Positives = 286/351 (81%), Gaps = 3/351 (0%)
Query: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60
MGIKGLTKLLA++AP ++ E Y GR +A+D S+SIYQFLIVVGR GTE+LTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGD 120
VTSHLQGM NRT+R+LEAGIKPV+VFDG+PP++K++ELAKR KR ++ DL AIE G+
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120
Query: 121 EDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASED 180
++ IEK+SKRTVKVTK+HN+DCKRLL LMGVPVV+A EAEAQCAALC++ KV+ +ASED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180
Query: 181 MDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIR 240
MDSLTFGA +FLRHL D S ++ PV EFEV+K+LEEL LTMDQFIDLCILSGCDYC++IR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR 240
Query: 241 GIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRALFKEPNVCTDIP--DFLW 298
GIGGQ ALKLIRQHG IE +++NL++ RY +PE+WPY E R LFKEP+V TD D W
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW 300
Query: 299 TPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGR-GKLLAPVAN 348
T PDEEG++ FL EN F+ DRV K++EKIK A +K S GR PVAN
Sbjct: 301 TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVAN 351
>AT1G29630.2 | chr1:10349587-10353538 FORWARD LENGTH=736
Length = 735
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 156/329 (47%), Gaps = 35/329 (10%)
Query: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60
MGI+GL LL V +++ G +VA+DT +++ + R+ + L +
Sbjct: 1 MGIQGLLPLLK----SIMVPIHIKELEGCIVAVDTYSWLHKGALSCSRELCKGLPTK--- 53
Query: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEV-- 118
H+Q ++R + G+KP+ VFDG P MK ++ KR+ R E+L RA+E
Sbjct: 54 --RHIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSR---KENLARALEHEA 108
Query: 119 -GDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIA 177
G+ + + V ++ + ++L V V AP EA+AQ A L +V AI
Sbjct: 109 NGNSSAAYECYSKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAII 168
Query: 178 SEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQF-----IDLCILSG 232
+ED D + FG R + + EF+ SK+ + L++ F +++CILSG
Sbjct: 169 TEDSDLIPFGCLRIIFKMDKFGHG----VEFQASKLPKNKDLSLSGFSSQMLLEMCILSG 224
Query: 233 CDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRAL--FKEPNVC 290
CDY +++ G+G +RA LI + + V+++L + SVP + RAL FK V
Sbjct: 225 CDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRVY 284
Query: 291 TDIPDFLWTPPDEEGLINFLAAENNFSPD 319
P+ E +I+ +N D
Sbjct: 285 D---------PNAEDIIHLCDISDNLGED 304
>AT3G28030.1 | chr3:10424321-10431178 FORWARD LENGTH=1480
Length = 1479
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 5/136 (3%)
Query: 116 IEVGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFA 175
+ +GDE K + V+ + +C+ LL + G+P + AP EAEAQCA + +++ V
Sbjct: 905 VSLGDEQ--RKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDG 962
Query: 176 IASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDY 235
I ++D D FGAR +++ D R V + + + +ELGL+ D+ I + +L G DY
Sbjct: 963 IVTDDSDVFLFGARSVYKNIFD---DRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDY 1019
Query: 236 CENIRGIGGQRALKLI 251
E I GIG A++++
Sbjct: 1020 TEGISGIGIVNAIEVV 1035
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 14/119 (11%)
Query: 1 MGIKGLTKLLAEHAPGAAVRRRV--EDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEA 58
MG++GL +LLA V RRV E + +AID S+ + QF+ + + +++ N
Sbjct: 1 MGVQGLWELLA------PVGRRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQN-- 52
Query: 59 GEVTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIE 117
+HL G R ++L KP+FVFDG P +K++ + R +R+ + + + E
Sbjct: 53 ----AHLIGFFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAE 107
>AT1G01880.1 | chr1:306558-308991 REVERSE LENGTH=600
Length = 599
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 23/230 (10%)
Query: 27 RGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRILEA-GIKPVFV 85
R + VA+D S I Q V + + HL+ RT+ + G PVFV
Sbjct: 24 RNKRVAVDLSFWIVQHETAV----------KGFVLKPHLRLTFFRTINLFSKFGAYPVFV 73
Query: 86 FDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGDEDLI-EKFSKRTVKVTKKHNEDCKR 144
DG P +K + R + G I+ + +I + S K+ + +C
Sbjct: 74 VDGTPSPLKSQARISRFFRSSG--------IDTCNLPVIKDGVSVERNKLFSEWVRECVE 125
Query: 145 LLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSP 204
LL L+G+PV++A GEAEA CA L V A + D D+ FGA ++ + S R P
Sbjct: 126 LLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDIKPNS--REP 183
Query: 205 VTEFEVSKVLEELGLTMDQFIDLCILSGCDY-CENIRGIGGQRALKLIRQ 253
+ +S + LGL I + +L G DY + GIG +AL+++R+
Sbjct: 184 FECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVRE 233
>AT1G18090.1 | chr1:6224539-6227715 FORWARD LENGTH=578
Length = 577
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 152/382 (39%), Gaps = 57/382 (14%)
Query: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTE------VL 54
MGIK L + + + + ++ Y G+ V ID Y +L KG L
Sbjct: 1 MGIKDLLRFMKPYI----LPIHIQKYAGKRVGIDA----YSWL----HKGAYSCSMELCL 48
Query: 55 TNEAGEVTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNR 114
+ + ++ ++R + I PV V DG K +R KR + +
Sbjct: 49 DTDGKKKLRYIDYFMHRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRKRKANFDAAMV 108
Query: 115 AIEVGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALC----EN 170
++ G+ + +R V VT ++L V + AP EA+AQ A L E
Sbjct: 109 KLKEGNVAAATELFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQ 168
Query: 171 HKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQ------- 223
+ A+ +ED D L +G + + FK + E VL+ + +DQ
Sbjct: 169 GGIAAVITEDSDLLAYGCKAVI-------FKMDRYGKGE-ELVLDNVFQAVDQKPSFQNF 220
Query: 224 ----FIDLCILSGCDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYS-VPEDW--P 276
F +C+L+GCD+ ++ G+G RA I ++ +E V+ L + VP+D+
Sbjct: 221 DQELFTAMCVLAGCDFLPSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSS 280
Query: 277 YQEVRALFKEPNVCT-DIPDFLWTPPDEEGLINFLAAENNF-----SPDRVVKSVE---- 326
+ E ++F+ V D P L+N + F SP V E
Sbjct: 281 FTEAVSVFQHARVYDFDAKKLKHLKPLSHNLLNLPVEQLEFLGPDLSPSVAVAIAEGNVD 340
Query: 327 --KIKAANDKFSLGRGKLLAPV 346
+KA N FS+ R L PV
Sbjct: 341 PITMKAFN-HFSVSRKPLKTPV 361
>AT3G48900.2 | chr3:18131854-18136239 FORWARD LENGTH=601
Length = 600
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 18/197 (9%)
Query: 64 HLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGDEDL 123
+L+G +R ++ + V DG P +K +R L E+ D D
Sbjct: 53 YLRGFFHRLRALIALNCSIILVSDGAIPGIKVPTYKRR----------LKARFEIAD-DG 101
Query: 124 IEKFSKRTVKVTKKHNEDC-----KRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIAS 178
+E + ++K C K + S +G+ + EAEAQCA L A S
Sbjct: 102 VEPSKETSLKRNMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFS 161
Query: 179 EDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCEN 238
D D FGA+ R + + V +E+ + ++LGL + I L +L G DY +
Sbjct: 162 FDSDIFLFGAKTVYREIC--LGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQG 219
Query: 239 IRGIGGQRALKLIRQHG 255
+RG+ ++A +L+R G
Sbjct: 220 VRGLRQEKACELVRSIG 236
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,714,541
Number of extensions: 365565
Number of successful extensions: 1064
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 7
Length of query: 412
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,337,553
Effective search space: 2592978983
Effective search space used: 2592978983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)