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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0777300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA repair protein (XPGC)/yeast Rad family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.57 (0.0384) R2 : 0.832
β1 : -2.39 (0.146) R2dD : 0.11 R2D : 0.113
β2 : 2.62 (0.136) R2dC : 0.252 R2C : 0.484
β3 : -2.06 (0.138) R2dE : 0.153 R2E : 0.454
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.94 (0.0826) R2dN8 : 0.0631 R2N8 : 0.02
σ : 0.719
deviance : 238.04
__
_____
C
peak time of C : 5.99
E
wheather : temperature
threshold : 19.36
memory length : 253
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.9
open length of G : 20.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.79 0.709 6.61 -2.44 2.46 -2.33 -0.0839 -1.82 -0.963 6.01 19.39 263 5.83 20.2
235.73 0.715 6.59 -2.38 2.61 -2.11 1.15 -- -0.943 5.97 19.3 257 5.88 20.2
227.66 0.703 6.61 -2.44 2.46 -2.35 -- -1.81 -0.965 6 19.37 265 5.78 20.2
238.04 0.719 6.57 -2.39 2.62 -2.06 -- -- -0.94 5.99 19.36 253 5.9 20.1
468.86 1.01 6.6 -1.95 -- -3.05 -- -2.3 -0.552 -- 18.82 163 6.42 20.1
345.56 0.871 6.58 -2.95 3.98 -- 1.22 -- -1.07 5.8 -- -- -- --
349.19 0.875 6.58 -2.94 3.98 -- -- -- -1.07 5.77 -- -- -- --
369.6 0.895 6.46 -1.38 -- -3.52 -- -- -0.473 -- 19.5 300 6.48 18.2
377.21 0.905 6.49 -- 2.39 -2.43 -- -- -0.59 5.95 19.5 282 5.67 20.3
1171.95 1.6 6.64 -2.82 -- -- -- -- -0.981 -- -- -- -- --
577.48 1.12 6.51 -- 3.94 -- -- -- -0.747 5.81 -- -- -- --
438.58 0.975 6.56 -- -- -3.82 -- -- -0.633 -- 19.4 317 7.15 17.2
1381.64 1.73 6.57 -- -- -- -- -- -0.668 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 235.75 temperature 20.0 270 > th dose independent rect. 6 20
2 239.17 temperature 10.0 90 > th dose dependent rect. 7 20
6 244.89 temperature 10.0 270 > th dose dependent rect. 21 14
9 248.11 temperature 20.0 270 > th dose independent rect. 21 4
10 248.47 temperature 10.0 10 > th dose dependent rect. 8 19
22 252.20 temperature 15.0 270 > th dose dependent rect. 21 4
23 252.66 temperature 20.0 270 > th dose independent rect. 19 7
29 253.96 precipitation 0.1 270 < th dose independent rect. 3 2
30 253.96 precipitation 0.1 270 < th dose dependent rect. 3 2
32 254.38 temperature 10.0 270 > th dose dependent rect. 19 7
44 256.41 wind 5.0 270 < th dose independent rect. 3 2
46 256.56 precipitation 0.1 270 < th dose independent rect. 2 4
47 256.56 precipitation 0.1 270 < th dose dependent rect. 2 4
49 257.01 wind 5.0 270 < th dose independent rect. 2 4
55 257.63 temperature 30.0 90 < th dose dependent rect. 3 6
63 258.15 radiation 1.0 270 < th dose dependent rect. 3 2
69 258.55 temperature 10.0 270 > th dose independent rect. 3 2
71 258.55 temperature 30.0 270 < th dose independent rect. 3 2
72 258.55 humidity 50.0 270 > th dose independent rect. 3 2
75 258.55 atmosphere 995.0 270 > th dose independent rect. 3 2
76 258.55 atmosphere 1010.0 270 < th dose independent rect. 3 2
78 258.55 radiation 20.0 270 < th dose independent rect. 3 2
81 258.55 temperature 10.0 270 > th dose independent rect. 5 22
82 258.59 radiation 40.0 270 < th dose dependent rect. 3 2
85 258.68 temperature 20.0 270 > th dose independent rect. 20 15
90 258.78 radiation 1.0 270 < th dose independent rect. 3 2
97 259.33 wind 9.0 270 < th dose independent rect. 5 22
98 259.34 temperature 30.0 270 < th dose dependent rect. 3 2
111 259.94 temperature 10.0 270 > th dose independent rect. 2 4
114 259.94 humidity 50.0 270 > th dose independent rect. 2 4
117 259.94 atmosphere 995.0 270 > th dose independent rect. 2 4
118 259.94 atmosphere 1015.0 270 < th dose independent rect. 2 4
119 259.94 radiation 20.0 270 < th dose independent rect. 2 4
122 259.94 temperature 10.0 270 > th dose independent rect. 6 20
126 259.97 wind 9.0 270 < th dose dependent rect. 3 2
128 260.13 wind 9.0 270 < th dose independent rect. 6 20
129 260.18 wind 1.0 270 > th dose independent rect. 3 1
131 260.25 radiation 40.0 270 < th dose dependent rect. 2 4
133 260.37 wind 9.0 90 < th dose dependent rect. 3 4
179 262.29 temperature 30.0 270 < th dose dependent rect. 1 5
185 262.51 radiation 40.0 90 < th dose dependent rect. 3 6
190 262.86 atmosphere 995.0 270 > th dose independent rect. 6 20
240 263.52 temperature 30.0 90 < th dose dependent rect. 3 8
250 264.08 precipitation 0.1 270 < th dose independent rect. 6 20
251 264.08 precipitation 0.1 270 < th dose dependent rect. 6 20
267 264.66 precipitation 0.1 10 < th dose independent rect. 3 5
268 264.66 precipitation 0.1 10 < th dose dependent rect. 3 5
287 265.51 humidity 50.0 270 > th dose dependent rect. 3 2
323 266.18 temperature 20.0 10 > th dose independent rect. 23 5
337 266.63 atmosphere 1015.0 90 < th dose independent rect. 7 20
396 267.54 wind 9.0 90 < th dose dependent rect. 7 20
397 267.55 wind 1.0 270 > th dose independent rect. 2 4
400 267.69 precipitation 0.1 270 < th dose independent rect. 5 22
401 267.69 precipitation 0.1 270 < th dose dependent rect. 5 22
414 267.91 humidity 50.0 90 > th dose dependent rect. 3 4
458 268.67 radiation 40.0 90 < th dose dependent rect. 3 8
468 268.95 wind 5.0 10 < th dose independent rect. 3 5
474 269.22 temperature 15.0 10 > th dose dependent rect. 22 6
503 269.56 temperature 15.0 10 > th dose dependent rect. 23 13
509 269.70 wind 9.0 10 < th dose dependent rect. 3 5
513 269.77 temperature 30.0 90 < th dose dependent rect. 3 16
536 270.15 precipitation 0.1 10 < th dose independent rect. 8 19
537 270.15 precipitation 0.1 10 < th dose dependent rect. 8 19
554 270.45 temperature 10.0 10 > th dose independent rect. 3 5
556 270.45 temperature 30.0 10 < th dose independent rect. 3 5
557 270.45 humidity 50.0 10 > th dose independent rect. 3 5
559 270.45 atmosphere 995.0 10 > th dose independent rect. 3 5
560 270.45 atmosphere 1015.0 10 < th dose independent rect. 3 5
561 270.45 temperature 10.0 10 > th dose independent rect. 8 19
567 270.52 wind 9.0 10 < th dose independent rect. 8 19
576 270.56 temperature 25.0 90 < th dose independent rect. 3 8
605 270.98 radiation 40.0 10 < th dose independent rect. 3 5
611 271.13 temperature 30.0 90 < th dose dependent rect. 3 14
613 271.18 humidity 50.0 90 > th dose dependent rect. 19 8
636 271.72 atmosphere 995.0 270 > th dose dependent rect. 3 2
675 272.50 humidity 50.0 270 > th dose dependent rect. 21 4
677 272.55 humidity 50.0 270 > th dose independent rect. 14 16
684 272.68 humidity 60.0 90 > th dose dependent rect. 21 6
705 272.92 precipitation 0.1 270 < th dose independent rect. 1 20
706 272.92 precipitation 0.1 270 < th dose dependent rect. 1 20
726 273.18 temperature 10.0 270 > th dose dependent rect. 3 2
730 273.30 atmosphere 1015.0 90 < th dose dependent rect. 3 4
731 273.34 atmosphere 995.0 10 > th dose independent rect. 8 19
743 273.46 atmosphere 995.0 90 > th dose dependent rect. 3 5
764 273.60 humidity 80.0 270 > th dose independent rect. 21 4
769 273.68 atmosphere 1015.0 10 < th dose independent rect. 8 19
802 274.14 wind 9.0 90 < th dose dependent rect. 19 8
811 274.34 humidity 70.0 90 > th dose dependent rect. 23 4
816 274.40 precipitation 0.1 270 < th dose independent rect. 15 15
818 274.40 precipitation 0.1 270 < th dose dependent rect. 15 15
832 274.59 humidity 50.0 270 > th dose independent rect. 21 14
833 274.63 temperature 10.0 90 > th dose dependent rect. 3 4
848 274.84 atmosphere 1015.0 270 < th dose dependent rect. 3 2
858 275.06 temperature 30.0 90 < th dose dependent rect. 3 10
865 275.21 radiation 10.0 14400 < th dose dependent rect. 21 7
893 275.59 precipitation 0.1 270 < th dose independent rect. 2 17
895 275.59 precipitation 0.1 270 < th dose dependent rect. 2 17
899 275.74 temperature 30.0 90 < th dose dependent rect. 3 18
938 276.20 temperature 20.0 10 > th dose independent rect. 23 15
941 276.25 radiation 30.0 90 < th dose independent rect. 3 8
950 276.32 wind 9.0 270 < th dose independent rect. 6 9
954 276.38 humidity 80.0 90 > th dose independent rect. 21 6
955 276.39 wind 9.0 270 < th dose independent rect. 21 14
961 276.45 temperature 10.0 270 > th dose independent rect. 11 10
962 276.45 temperature 10.0 270 > th dose independent rect. 21 14
963 276.45 atmosphere 995.0 270 > th dose independent rect. 21 14
964 276.46 temperature 25.0 270 < th dose independent sin 9 NA
998 276.66 precipitation 0.1 270 < th dose independent rect. 11 10