BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0777300 Os01g0777300|AB179769
(836 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29630.2 | chr1:10349587-10353538 FORWARD LENGTH=736 590 e-169
AT1G18090.1 | chr1:6224539-6227715 FORWARD LENGTH=578 296 3e-80
AT5G26680.1 | chr5:9311882-9315458 REVERSE LENGTH=454 88 2e-17
AT2G02550.2 | chr2:687384-688764 FORWARD LENGTH=201 64 4e-10
AT3G28030.1 | chr3:10424321-10431178 FORWARD LENGTH=1480 63 8e-10
>AT1G29630.2 | chr1:10349587-10353538 FORWARD LENGTH=736
Length = 735
Score = 590 bits (1522), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/482 (60%), Positives = 353/482 (73%), Gaps = 18/482 (3%)
Query: 1 MGIQGLLPQLKSIMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLCKGLPTTRHIEYCM 60
MGIQGLLP LKSIM PI ++ L+G VAVDTYSWLHKGALSC LCKGLPT RHI+YCM
Sbjct: 1 MGIQGLLPLLKSIMVPIHIKELEGCIVAVDTYSWLHKGALSCSRELCKGLPTKRHIQYCM 60
Query: 61 HRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGNSRAAFECYQ 120
HRVN+LRHHGVKPI+VFDGG LPMK +QE KR RSRKENL RA EHE+ GNS AA+ECY
Sbjct: 61 HRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKENLARALEHEANGNSSAAYECYS 120
Query: 121 KAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITEDSDLIPFGCS 180
KAVDI+P IA ELIQVL+QE VDY+VAPYEADAQM FL++ K VDA+ITEDSDLIPFGC
Sbjct: 121 KAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLIPFGCL 180
Query: 181 RIIFKMDKFGQGVEFHITRLQRCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAH 240
RIIFKMDKFG GVEF ++L + ++L L+GF+ QMLLEMCILSGCDYL SLPGMG+KRAH
Sbjct: 181 RIIFKMDKFGHGVEFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAH 240
Query: 241 ALIQKLKGHEKVIKHLRYSAVSVPPQYEENFRKAIWAFQFQRVYDPVTEDIVHLSGIPHG 300
ALI K K +++VIKHL+YS VSVPP YEE+F++A+ F+ QRVYDP EDI+HL I
Sbjct: 241 ALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDISDN 300
Query: 301 SSEDLDFLGPWLPQTVAKGIAQGNIDPITKEPFEGKTESSALAFDKVHLNRESSAPSNGK 360
ED DF+GP +PQ +AKGIA G +DP T+ PF+ ++ + LA D + +S P K
Sbjct: 301 LGEDSDFVGPSMPQDIAKGIALGQLDPFTQLPFQAESVTPKLAVDDIS-RPKSFKPETVK 359
Query: 361 KKLDLPVQRNVLTNYFCLASLEAKRKFRAPKVTPKQQVLNGSLPSPRIEDSGTPDLIEDT 420
KKLDLPVQ+N+LT YFC AS+EAKRKF+AP+++P L + SP I D TPDL +
Sbjct: 360 KKLDLPVQKNLLTKYFCFASVEAKRKFKAPRISPMS--LTPTDESPSIPDDNTPDLDALS 417
Query: 421 SLPSNNIQVYQ-----CSSEHFSS-GTPLDDSINTASQ------CSSERVRCDIPRDDSA 468
S +N VY C SE +P DD++ + C E D P+ DS
Sbjct: 418 SQTTNESPVYSLGENPCVSEVAEKRDSPDDDAVERNHKDLHHKYCERE---VDRPKSDSL 474
Query: 469 SV 470
V
Sbjct: 475 KV 476
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 636 INTNSEGKFGCNVAHVNKYSGIAEKSMDKFAALISSFRYA--GSRASGLRAPLKDVKNTL 693
+ T+ KFG N++H+ YS IAEKS+++F + ISSF+Y+ GSRASGLRAPLKD++NT
Sbjct: 646 LETDDVEKFGSNISHIGHYSEIAEKSVERFVSAISSFKYSGTGSRASGLRAPLKDIRNTC 705
Query: 694 PVRSV-LRPPEQRFG 707
P + + L+P +FG
Sbjct: 706 PSKGLSLKPDISKFG 720
>AT1G18090.1 | chr1:6224539-6227715 FORWARD LENGTH=578
Length = 577
Score = 296 bits (758), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/347 (43%), Positives = 214/347 (61%), Gaps = 14/347 (4%)
Query: 1 MGIQGLLPQLKSIMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLC---KGLPTTRHIE 57
MGI+ LL +K + PI ++ G+ V +D YSWLHKGA SC LC G R+I+
Sbjct: 1 MGIKDLLRFMKPYILPIHIQKYAGKRVGIDAYSWLHKGAYSCSMELCLDTDGKKKLRYID 60
Query: 58 YCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGNSRAAFE 117
Y MHRVN+L+H+ + P++V DGG++P K +R R RK N + A GN AA E
Sbjct: 61 YFMHRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRKRKANFDAAMVKLKEGNVAAATE 120
Query: 118 CYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKL----VDAVITEDSD 173
+Q+AV +T +A +LIQVLK E V++IVAPYEADAQ+ +LS +L + AVITEDSD
Sbjct: 121 LFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVITEDSD 180
Query: 174 LIPFGCSRIIFKMDKFGQGVEFHITRLQRC--RELDLNGFTMQMLLEMCILSGCDYLPSL 231
L+ +GC +IFKMD++G+G E + + + ++ F ++ MC+L+GCD+LPS+
Sbjct: 181 LLAYGCKAVIFKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAGCDFLPSV 240
Query: 232 PGMGVKRAHALIQKLKGHEKVIKHLRY-SAVSVPPQYEENFRKAIWAFQFQRVYDPVTED 290
PG+G+ RAHA I K + E V+ L+ VP Y +F +A+ FQ RVYD +
Sbjct: 241 PGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEAVSVFQHARVYDFDAKK 300
Query: 291 IVHLSGIPHGS----SEDLDFLGPWLPQTVAKGIAQGNIDPITKEPF 333
+ HL + H E L+FLGP L +VA IA+GN+DPIT + F
Sbjct: 301 LKHLKPLSHNLLNLPVEQLEFLGPDLSPSVAVAIAEGNVDPITMKAF 347
>AT5G26680.1 | chr5:9311882-9315458 REVERSE LENGTH=454
Length = 453
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 130/283 (45%), Gaps = 18/283 (6%)
Query: 1 MGIQGLLPQLK----SIMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLCKGLP----- 51
MGI+GL L S M E+ G+ +AVD +++ + G + L
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 52 TTRHIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGN 111
T H++ +R L G+KP+ VFDG +K + KR R + AGN
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120
Query: 112 SRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITED 171
+ ++ V +T + + ++L+ V + A EA+AQ L + V V +ED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180
Query: 172 SDLIPFGCSRII-FKMDKFGQGV---EFHITRLQRCRELDLNGFTMQMLLEMCILSGCDY 227
D + FG + + MD + + EF + ++ EL L TM +++CILSGCDY
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKI--LEELQL---TMDQFIDLCILSGCDY 235
Query: 228 LPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQYEEN 270
S+ G+G + A LI++ E ++++L +P ++ N
Sbjct: 236 CDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYN 278
>AT2G02550.2 | chr2:687384-688764 FORWARD LENGTH=201
Length = 200
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 20/145 (13%)
Query: 13 IMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLCK--GLPTTRHIEYCMHRVNMLRHHG 70
++ I AL +T+A+D WL++GAL+ + + P + HI + + +V
Sbjct: 15 VLKSISFSALNSKTLAIDASMWLYRGALNNARKFLEEPTTPNSEHIMFVIKKVKQFIDRN 74
Query: 71 VKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGNSRA------------AFEC 118
V PILVFDG LP+K R+ + LE AK+ +++ A A +
Sbjct: 75 VNPILVFDGHRLPIKS------PRNPIKTLEYAKDLDASAQLMAPDDPKRKDKEKNATKI 128
Query: 119 YQKAVDITPRIAFELIQVLKQEKVD 143
+Q + ITP + I+ + + ++
Sbjct: 129 FQSHIHITPYVIHVFIEYVYNQVIE 153
>AT3G28030.1 | chr3:10424321-10431178 FORWARD LENGTH=1480
Length = 1479
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 13/115 (11%)
Query: 132 ELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITEDSDLIPFGCSRI---IFKMDK 188
EL+Q+ + YI+AP EA+AQ F+ + LVD ++T+DSD+ FG + IF K
Sbjct: 931 ELLQIFG---IPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRK 987
Query: 189 FGQGVEFHITRLQRCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAHALI 243
+ + T + E +L G + ++ M +L G DY + G+G+ A ++
Sbjct: 988 YVE------TYFMKDIEKEL-GLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVV 1035
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,150,948
Number of extensions: 877028
Number of successful extensions: 2360
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2352
Number of HSP's successfully gapped: 6
Length of query: 836
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 729
Effective length of database: 8,173,057
Effective search space: 5958158553
Effective search space used: 5958158553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)