BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0777300 Os01g0777300|AB179769
(836 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0777300 DNA repair protein (XPGC)/yeast Rad family pro... 1741 0.0
Os03g0834000 Flap endonuclease-1b (EC 3.-.-.-) (OsFEN-1b) 105 2e-22
Os05g0540100 Flap endonuclease-1a (EC 3.-.-.-) (OsFEN-1a) 100 4e-21
Os03g0205400 Similar to Xeroderma pigmentosum complementati... 75 3e-13
>Os01g0777300 DNA repair protein (XPGC)/yeast Rad family protein
Length = 836
Score = 1741 bits (4508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/836 (100%), Positives = 836/836 (100%)
Query: 1 MGIQGLLPQLKSIMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLCKGLPTTRHIEYCM 60
MGIQGLLPQLKSIMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLCKGLPTTRHIEYCM
Sbjct: 1 MGIQGLLPQLKSIMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLCKGLPTTRHIEYCM 60
Query: 61 HRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGNSRAAFECYQ 120
HRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGNSRAAFECYQ
Sbjct: 61 HRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGNSRAAFECYQ 120
Query: 121 KAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITEDSDLIPFGCS 180
KAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITEDSDLIPFGCS
Sbjct: 121 KAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITEDSDLIPFGCS 180
Query: 181 RIIFKMDKFGQGVEFHITRLQRCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAH 240
RIIFKMDKFGQGVEFHITRLQRCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAH
Sbjct: 181 RIIFKMDKFGQGVEFHITRLQRCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAH 240
Query: 241 ALIQKLKGHEKVIKHLRYSAVSVPPQYEENFRKAIWAFQFQRVYDPVTEDIVHLSGIPHG 300
ALIQKLKGHEKVIKHLRYSAVSVPPQYEENFRKAIWAFQFQRVYDPVTEDIVHLSGIPHG
Sbjct: 241 ALIQKLKGHEKVIKHLRYSAVSVPPQYEENFRKAIWAFQFQRVYDPVTEDIVHLSGIPHG 300
Query: 301 SSEDLDFLGPWLPQTVAKGIAQGNIDPITKEPFEGKTESSALAFDKVHLNRESSAPSNGK 360
SSEDLDFLGPWLPQTVAKGIAQGNIDPITKEPFEGKTESSALAFDKVHLNRESSAPSNGK
Sbjct: 301 SSEDLDFLGPWLPQTVAKGIAQGNIDPITKEPFEGKTESSALAFDKVHLNRESSAPSNGK 360
Query: 361 KKLDLPVQRNVLTNYFCLASLEAKRKFRAPKVTPKQQVLNGSLPSPRIEDSGTPDLIEDT 420
KKLDLPVQRNVLTNYFCLASLEAKRKFRAPKVTPKQQVLNGSLPSPRIEDSGTPDLIEDT
Sbjct: 361 KKLDLPVQRNVLTNYFCLASLEAKRKFRAPKVTPKQQVLNGSLPSPRIEDSGTPDLIEDT 420
Query: 421 SLPSNNIQVYQCSSEHFSSGTPLDDSINTASQCSSERVRCDIPRDDSASVSPQCSHDIGS 480
SLPSNNIQVYQCSSEHFSSGTPLDDSINTASQCSSERVRCDIPRDDSASVSPQCSHDIGS
Sbjct: 421 SLPSNNIQVYQCSSEHFSSGTPLDDSINTASQCSSERVRCDIPRDDSASVSPQCSHDIGS 480
Query: 481 DPAEDPDIEGNKVKVNFCNRSTIPTGSFLEGTLPGISDPFLDSHNTEPSRAAPRYAEKSN 540
DPAEDPDIEGNKVKVNFCNRSTIPTGSFLEGTLPGISDPFLDSHNTEPSRAAPRYAEKSN
Sbjct: 481 DPAEDPDIEGNKVKVNFCNRSTIPTGSFLEGTLPGISDPFLDSHNTEPSRAAPRYAEKSN 540
Query: 541 VVSANRNITVRSSYFKTVNKRVCTNQGEDECHDEDNCETGNYTLPGDQQRSSGGILKRRK 600
VVSANRNITVRSSYFKTVNKRVCTNQGEDECHDEDNCETGNYTLPGDQQRSSGGILKRRK
Sbjct: 541 VVSANRNITVRSSYFKTVNKRVCTNQGEDECHDEDNCETGNYTLPGDQQRSSGGILKRRK 600
Query: 601 FSDPQNFEDGMFQPTSPHESPPVADKGCDSDSHDGINTNSEGKFGCNVAHVNKYSGIAEK 660
FSDPQNFEDGMFQPTSPHESPPVADKGCDSDSHDGINTNSEGKFGCNVAHVNKYSGIAEK
Sbjct: 601 FSDPQNFEDGMFQPTSPHESPPVADKGCDSDSHDGINTNSEGKFGCNVAHVNKYSGIAEK 660
Query: 661 SMDKFAALISSFRYAGSRASGLRAPLKDVKNTLPVRSVLRPPEQRFGCTAKKTTRVPLQS 720
SMDKFAALISSFRYAGSRASGLRAPLKDVKNTLPVRSVLRPPEQRFGCTAKKTTRVPLQS
Sbjct: 661 SMDKFAALISSFRYAGSRASGLRAPLKDVKNTLPVRSVLRPPEQRFGCTAKKTTRVPLQS 720
Query: 721 RFSSDATNSTDVPDLSTFAYRPTTASAHSDQGKITSKATDAAAGPPDLRTFAYAPTRSTT 780
RFSSDATNSTDVPDLSTFAYRPTTASAHSDQGKITSKATDAAAGPPDLRTFAYAPTRSTT
Sbjct: 721 RFSSDATNSTDVPDLSTFAYRPTTASAHSDQGKITSKATDAAAGPPDLRTFAYAPTRSTT 780
Query: 781 SRFDQSENTRKAMCTADSPPDISTFEYKPMKSAVRRSDGSKFSGAALKAARRTSRS 836
SRFDQSENTRKAMCTADSPPDISTFEYKPMKSAVRRSDGSKFSGAALKAARRTSRS
Sbjct: 781 SRFDQSENTRKAMCTADSPPDISTFEYKPMKSAVRRSDGSKFSGAALKAARRTSRS 836
>Os03g0834000 Flap endonuclease-1b (EC 3.-.-.-) (OsFEN-1b)
Length = 412
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 142/284 (50%), Gaps = 26/284 (9%)
Query: 1 MGIQGLLPQLKSIMAPIG-----VEALKGQTVAVDTYSWLHKGALSCGDRLCKGLP---- 51
MGI+GL +L + AP VE +G+ VA+DT +++ + G + + L
Sbjct: 1 MGIKGL-TKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAG 59
Query: 52 -TTRHIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSR---KENLERAKEHE 107
T H++ ++R + G+KP+ VFDG MK + KR R E+L RA E
Sbjct: 60 EVTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIE-- 117
Query: 108 SAGNSRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAV 167
G+ + ++ V +T + + ++L V + AP EA+AQ L N V A+
Sbjct: 118 -VGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAI 176
Query: 168 ITEDSDLIPFGCSRIIFKMD----KFGQGVEFHITRLQRCRELDLNGFTMQMLLEMCILS 223
+ED D + FG R + + K EF ++++ L+ G TM +++CILS
Sbjct: 177 ASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKV-----LEELGLTMDQFIDLCILS 231
Query: 224 GCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQY 267
GCDY ++ G+G +RA LI++ E+V+++L + SVP +
Sbjct: 232 GCDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDW 275
>Os05g0540100 Flap endonuclease-1a (EC 3.-.-.-) (OsFEN-1a)
Length = 380
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 135/280 (48%), Gaps = 18/280 (6%)
Query: 1 MGIQGLLPQLK----SIMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLCKGL-----P 51
MGI+GL L M E+ G+ +AVD +++ + G + L
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 52 TTRHIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGN 111
T H++ +R L G+KP+ VFDG +K + KR R++ + E G+
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120
Query: 112 SRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITED 171
A + ++ V +T + E ++L+ V + AP EA+A+ L +N +V AV +ED
Sbjct: 121 KDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASED 180
Query: 172 SDLIPFGCSRII-FKMDKFGQGV---EFHITRLQRCRELDLNGFTMQMLLEMCILSGCDY 227
D + FG R + MD + + EF + ++ EL+L TM +++CILSGCDY
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKV--LEELEL---TMDQFIDLCILSGCDY 235
Query: 228 LPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQY 267
S+ G+G + A LI++ E +++++ +P +
Sbjct: 236 CDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDW 275
>Os03g0205400 Similar to Xeroderma pigmentosum complementation group G protein
splice variant
Length = 1470
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 17/149 (11%)
Query: 99 NLERA-----KEHESAGNSRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADA 153
NLE+ +E E GN R E + ++V + + E ++L+ + YI+AP EA+A
Sbjct: 823 NLEKELSLLRQEQEYLGNERRKLESHAESV--SSEMFAECQELLQMFGLPYIIAPMEAEA 880
Query: 154 QMTFLSVNKLVDAVITEDSDLIPFGCSRI---IFKMDKFGQGVEFHITRLQRCRELDLNG 210
Q ++ + LVD V+T+DSD+ FG + IF K+ VE T L + E +L G
Sbjct: 881 QCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNIFDDRKY---VE---TYLMKDIESEL-G 933
Query: 211 FTMQMLLEMCILSGCDYLPSLPGMGVKRA 239
T + L+ M +L G DY + G+G+ A
Sbjct: 934 LTREQLIRMAMLLGSDYTEGISGIGIVNA 962
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,298,493
Number of extensions: 1383576
Number of successful extensions: 3583
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3572
Number of HSP's successfully gapped: 4
Length of query: 836
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 727
Effective length of database: 11,344,475
Effective search space: 8247433325
Effective search space used: 8247433325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)