Os03g0205400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xeroderma pigmentosum complementation group G protein splice variant.
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Os03g0205400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Xeroderma pigmentosum complementation group G protein splice variant.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.8 | 0.366 | 8.62 | 1.83 | 0.472 | -0.827 | -0.375 | 2.64 | 0.562 | 23.3 | 20.83 | 1425 | -- | -- |
| 65.57 | 0.377 | 8.72 | 1.06 | 0.437 | -0.91 | -0.28 | -- | 0.336 | 23.2 | 8.286 | 1468 | -- | -- |
| 61.34 | 0.365 | 8.62 | 1.85 | 0.465 | -0.825 | -- | 2.64 | 0.566 | 23.2 | 20.91 | 1485 | -- | -- |
| 65.36 | 0.377 | 8.72 | 1.09 | 0.632 | -1.08 | -- | -- | 0.352 | 22.9 | 14.08 | 943 | -- | -- |
| 71.32 | 0.395 | 8.67 | 1.34 | -- | -0.99 | -- | 2.15 | 0.429 | -- | 20.4 | 1558 | -- | -- |
| 81.32 | 0.423 | 8.75 | 0.782 | 0.437 | -- | -0.329 | -- | 0.178 | 23 | -- | -- | -- | -- |
| 81.77 | 0.423 | 8.75 | 0.796 | 0.439 | -- | -- | -- | 0.18 | 23 | -- | -- | -- | -- |
| 73.85 | 0.402 | 8.7 | 1.02 | -- | -1.17 | -- | -- | 0.34 | -- | 14.08 | 943 | -- | -- |
| 92.91 | 0.449 | 8.76 | -- | 0.56 | -0.596 | -- | -- | 0.168 | 23 | 14.2 | 887 | -- | -- |
| 93.76 | 0.452 | 8.74 | 0.806 | -- | -- | -- | -- | 0.183 | -- | -- | -- | -- | -- |
| 98.46 | 0.464 | 8.77 | -- | 0.446 | -- | -- | -- | 0.0909 | 23.2 | -- | -- | -- | -- |
| 99.67 | 0.467 | 8.74 | -- | -- | -0.852 | -- | -- | 0.191 | -- | 14.2 | 887 | -- | -- |
| 110.88 | 0.491 | 8.76 | -- | -- | -- | -- | -- | 0.0936 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 14 |
| 11 | 60.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 19 |
| 27 | 60.60 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 51 | 60.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 57 | 60.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 225 | 60.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 22 |
| 240 | 60.90 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 242 | 60.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 312 | 60.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 353 | 61.01 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |
| 407 | 61.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 568 | 61.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 583 | 61.19 | temperature | 15 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 624 | 61.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 661 | 61.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 742 | 61.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 822 | 61.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 879 | 61.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |