BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0833900 Os03g0833900|AK073655
         (186 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0833900  Similar to Cytosine deaminase (EC 3.5.4.1)          348   2e-96
Os07g0245100  Similar to Cytosine deaminase (EC 3.5.4.1)          290   4e-79
Os06g0489500  CMP/dCMP deaminase, zinc-binding domain contai...    81   5e-16

>Os03g0833900 Similar to Cytosine deaminase (EC 3.5.4.1)
          Length = 186

 Score =  348 bits (892), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 170/186 (91%), Positives = 170/186 (91%)

Query: 1   MEEAQVVESKDGTISVASAFAGHQEAVQDRDHKFLSKAVEEAYQGVDCGHGGPFGAVVVR 60
           MEEAQVVESKDGTISVASAFAGHQEAVQDRDHKFLSKAVEEAYQGVDCGHGGPFGAVVVR
Sbjct: 1   MEEAQVVESKDGTISVASAFAGHQEAVQDRDHKFLSKAVEEAYQGVDCGHGGPFGAVVVR 60

Query: 61  NDEIVVSCHNMVLDYTDPTAHAEVTAIREACKKLGKIELSDCEMYASCEPCPMCFGAVHL 120
           NDEIVVSCHNMVLDYTDPTAHAEVTAIREACKKLGKIELSDCEMYASCEPCPMCFGAVHL
Sbjct: 61  NDEIVVSCHNMVLDYTDPTAHAEVTAIREACKKLGKIELSDCEMYASCEPCPMCFGAVHL 120

Query: 121 SRIKRLVYGAKXXXXXXXXXXXXXXXXLRGTAYYQKANLEIRRADGNGALIAEQVFENTK 180
           SRIKRLVYGAK                LRGTAYYQKANLEIRRADGNGALIAEQVFENTK
Sbjct: 121 SRIKRLVYGAKAEAAIAIGFDDFIADALRGTAYYQKANLEIRRADGNGALIAEQVFENTK 180

Query: 181 EKFRMY 186
           EKFRMY
Sbjct: 181 EKFRMY 186



>Os07g0245100 Similar to Cytosine deaminase (EC 3.5.4.1)
          Length = 186

 Score =  290 bits (743), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 150/181 (82%), Positives = 160/181 (88%)

Query: 6   VVESKDGTISVASAFAGHQEAVQDRDHKFLSKAVEEAYQGVDCGHGGPFGAVVVRNDEIV 65
           VVESKDGTISVASAFAGH EAVQDRDHKFL+KAVEEAY+GVDCG GGPFGAVVVRNDE+V
Sbjct: 6   VVESKDGTISVASAFAGHHEAVQDRDHKFLTKAVEEAYRGVDCGDGGPFGAVVVRNDEVV 65

Query: 66  VSCHNMVLDYTDPTAHAEVTAIREACKKLGKIELSDCEMYASCEPCPMCFGAVHLSRIKR 125
           VSCHNMVL +TDPTAHAEVTAIREACKKLGKIELSDCE+YASCEPCPMCFGAVHLSRIKR
Sbjct: 66  VSCHNMVLKHTDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLSRIKR 125

Query: 126 LVYGAKXXXXXXXXXXXXXXXXLRGTAYYQKANLEIRRADGNGALIAEQVFENTKEKFRM 185
           LVYGAK                LRGT +YQKAN+EI++ADGNGALIAEQVFE TKEKF+M
Sbjct: 126 LVYGAKAEAAIAIGFDDFIADALRGTGFYQKANMEIKKADGNGALIAEQVFEKTKEKFQM 185

Query: 186 Y 186
           Y
Sbjct: 186 Y 186



>Os06g0489500 CMP/dCMP deaminase, zinc-binding domain containing protein
          Length = 1590

 Score = 80.9 bits (198), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 1/100 (1%)

Query: 31   DHKFLSKAVEEAYQGVDCGHGGPFGAVVVRNDEIVVSCHNMVLDYTDPTAHAEVTAIREA 90
            D  F+ +A+ EA +  D     P GAV+V+N EI+    N+V D  D TAHAE+  IREA
Sbjct: 1390 DELFMREALHEAQRAADLWEV-PVGAVLVQNGEIIARGCNLVEDLRDSTAHAEIVCIREA 1448

Query: 91   CKKLGKIELSDCEMYASCEPCPMCFGAVHLSRIKRLVYGA 130
              KL    L+D  +Y + EPC MC GA+  +R+  +V+GA
Sbjct: 1449 SNKLKTWRLADTTLYVTLEPCAMCAGAILQARVDTVVWGA 1488



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,677,098
Number of extensions: 199429
Number of successful extensions: 474
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 3
Length of query: 186
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 91
Effective length of database: 12,075,471
Effective search space: 1098867861
Effective search space used: 1098867861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)