Os06g0489500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CMP/dCMP deaminase, zinc-binding domain containing protein.
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Os06g0489500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CMP/dCMP deaminase, zinc-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.55 | 0.377 | 8.84 | 0.748 | 1.45 | 2.16 | -1.26 | -0.639 | 0.141 | 21.2 | 10.05 | 106 | -- | -- |
| 64.82 | 0.375 | 8.83 | 0.841 | 1.43 | 2.14 | -1.21 | -- | 0.169 | 21.2 | 8.526 | 116 | -- | -- |
| 69.81 | 0.389 | 8.83 | 0.864 | 1.46 | 2.19 | -- | -0.0684 | 0.157 | 21.3 | 10.44 | 99 | -- | -- |
| 69.82 | 0.389 | 8.83 | 0.874 | 1.46 | 2.18 | -- | -- | 0.16 | 21.3 | 10.27 | 99 | -- | -- |
| 125.19 | 0.521 | 8.83 | 0.524 | -- | 2.8 | -- | -0.809 | 0.0129 | -- | 14.9 | 571 | -- | -- |
| 111.53 | 0.495 | 8.76 | 1.29 | 1.56 | -- | -1.33 | -- | 0.468 | 19.8 | -- | -- | -- | -- |
| 116.62 | 0.506 | 8.76 | 1.32 | 1.56 | -- | -- | -- | 0.466 | 19.8 | -- | -- | -- | -- |
| 126.16 | 0.523 | 8.82 | 0.654 | -- | 2.82 | -- | -- | 0.0315 | -- | 13.7 | 565 | -- | -- |
| 87.9 | 0.437 | 8.86 | -- | 1.47 | 2.62 | -- | -- | 0.0104 | 21.7 | 9.358 | 99 | -- | -- |
| 248.94 | 0.737 | 8.73 | 1.3 | -- | -- | -- | -- | 0.444 | -- | -- | -- | -- | -- |
| 162.77 | 0.597 | 8.8 | -- | 1.55 | -- | -- | -- | 0.319 | 19.9 | -- | -- | -- | -- |
| 136.26 | 0.544 | 8.84 | -- | -- | 3.02 | -- | -- | -0.0742 | -- | 14.8 | 583 | -- | -- |
| 293.82 | 0.8 | 8.76 | -- | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 3 | 61.63 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 5 | 61.77 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 10 | 62.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 18 | 62.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 24 | 63.68 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 25 | 63.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 31 | 64.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 23 |
| 37 | 64.65 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 59 | 65.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 73 | 65.60 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 79 | 65.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 81 | 65.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 82 | 65.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 96 | 66.05 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 125 | 66.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 139 | 66.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 194 | 67.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 214 | 67.55 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 232 | 67.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 258 | 67.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 272 | 68.12 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 297 | 68.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 314 | 68.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 352 | 68.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 413 | 69.06 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 426 | 69.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 569 | 69.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 586 | 70.01 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 612 | 70.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 731 | 70.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 799 | 70.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 999 | 71.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |