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Os07g0245100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytosine deaminase (EC 3.5.4.1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.43 (0.031) R2 : 0.878
β1 : -3.47 (0.113) R2dD : 0.263 R2D : 0.188
β2 : 2.59 (0.0802) R2dC : 0.281 R2C : 0.241
β3 : -2.24 (0.0629) R2dE : 0.343 R2E : 0.307
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.14 (0.0661) R2dN8 : 0.107 R2N8 : -0.00078
σ : 0.578
deviance : 154.2
__
_____
C
peak time of C : 6.96
E
wheather : temperature
threshold : 15.3
memory length : 225
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7
open length of G : 8.45

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
148.03 0.572 8.43 -3.5 2.5 -2.31 1.57 0.261 -1.13 6.99 15.47 257 6.99 8.24
148.07 0.567 8.42 -3.49 2.52 -2.27 1.62 -- -1.12 6.97 15.44 243 7.02 8.32
153.58 0.577 8.42 -3.48 2.61 -2.23 -- 0.335 -1.12 6.92 15.34 224 7.02 8.47
154.2 0.578 8.43 -3.47 2.59 -2.24 -- -- -1.14 6.96 15.3 225 7 8.45
240.47 0.722 8.42 -3.23 -- -3.46 -- -0.102 -0.874 -- 17.9 468 7.28 9.37
217.62 0.692 8.43 -3.52 3.62 -- 0.818 -- -1.04 4.17 -- -- -- --
219.5 0.694 8.43 -3.53 3.63 -- -- -- -1.05 4.16 -- -- -- --
224.34 0.698 8.43 -3.43 -- -3.61 -- -- -0.792 -- 15.12 549 6.28 10.2
446.05 0.984 8.3 -- 2.56 -2.13 -- -- -0.67 6.69 20.4 208 7.23 8.52
931.62 1.43 8.45 -3.38 -- -- -- -- -0.949 -- -- -- -- --
547.36 1.09 8.35 -- 3.56 -- -- -- -0.653 4.18 -- -- -- --
486.81 1.03 8.36 -- -- -3.48 -- -- -0.513 -- 20.02 469 6.33 11.5
1233.14 1.64 8.37 -- -- -- -- -- -0.574 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 150.83 temperature 15.0 270 > th dose independent rect. 7 8
2 152.30 wind 7.0 270 < th dose independent rect. 7 8
6 155.76 radiation 1.0 270 > th dose independent rect. 7 8
7 156.89 temperature 10.0 270 > th dose dependent rect. 7 7
10 157.67 humidity 90.0 90 < th dose independent rect. 8 8
17 158.45 precipitation 0.1 270 < th dose independent rect. 7 8
18 158.45 precipitation 0.1 270 < th dose dependent rect. 7 8
20 159.07 atmosphere 995.0 270 > th dose independent rect. 7 8
22 159.26 radiation 30.0 270 < th dose independent rect. 15 16
24 159.33 atmosphere 1015.0 270 < th dose independent rect. 7 8
25 159.33 temperature 10.0 270 > th dose independent rect. 15 16
28 159.63 humidity 50.0 270 > th dose dependent rect. 19 7
30 159.83 wind 7.0 270 < th dose independent rect. 8 18
36 159.99 temperature 10.0 90 > th dose dependent rect. 9 18
37 160.06 wind 7.0 270 < th dose independent rect. 9 16
42 160.29 radiation 40.0 270 < th dose dependent rect. 15 16
43 160.39 radiation 40.0 270 < th dose dependent rect. 2 8
47 160.70 wind 9.0 270 < th dose dependent rect. 7 8
48 160.75 precipitation 0.1 270 < th dose independent rect. 15 16
49 160.75 precipitation 0.1 270 < th dose dependent rect. 15 16
56 161.25 wind 9.0 270 < th dose independent rect. 15 16
69 161.80 wind 7.0 270 < th dose independent rect. 6 21
71 161.83 humidity 60.0 270 > th dose independent rect. 19 8
72 161.84 temperature 10.0 270 > th dose independent rect. 19 8
73 161.84 temperature 30.0 270 < th dose independent rect. 19 8
75 161.84 atmosphere 995.0 270 > th dose independent rect. 19 8
76 161.84 radiation 1.0 270 < th dose independent rect. 19 8
81 161.84 temperature 10.0 270 > th dose independent rect. 3 16
82 161.84 atmosphere 1015.0 270 < th dose independent rect. 3 16
83 161.84 radiation 1.0 270 < th dose dependent rect. 19 8
90 161.97 wind 9.0 270 < th dose independent rect. 19 8
96 162.44 radiation 30.0 270 < th dose independent rect. 1 8
105 162.59 temperature 10.0 10 > th dose dependent rect. 9 19
106 162.66 atmosphere 1000.0 270 > th dose independent rect. 20 6
114 162.75 radiation 40.0 270 < th dose dependent rect. 2 17
115 162.78 humidity 50.0 270 > th dose independent rect. 7 8
126 163.13 radiation 40.0 270 < th dose independent rect. 2 17
127 163.18 humidity 50.0 270 > th dose independent rect. 15 16
148 163.87 wind 7.0 270 < th dose independent rect. 21 17
153 164.00 wind 9.0 270 < th dose dependent rect. 7 19
156 164.09 wind 1.0 270 > th dose independent rect. 7 8
161 164.18 precipitation 0.1 270 < th dose independent rect. 3 16
162 164.18 precipitation 0.1 270 < th dose dependent rect. 3 16
166 164.31 precipitation 0.1 270 < th dose independent rect. 19 8
168 164.31 precipitation 0.1 270 < th dose dependent rect. 19 8
169 164.40 temperature 10.0 270 > th dose independent rect. 20 6
170 164.40 temperature 30.0 270 < th dose independent rect. 20 6
171 164.40 humidity 50.0 270 > th dose independent rect. 20 6
175 164.40 radiation 1.0 270 < th dose independent rect. 20 6
180 164.40 temperature 10.0 270 > th dose independent rect. 2 18
181 164.40 atmosphere 1015.0 270 < th dose independent rect. 2 18
182 164.40 radiation 1.0 270 < th dose dependent rect. 20 6
190 164.50 wind 9.0 270 < th dose independent rect. 20 6
207 164.87 temperature 15.0 270 > th dose independent rect. 21 16
274 165.58 precipitation 0.1 270 < th dose independent rect. 20 6
277 165.58 precipitation 0.1 270 < th dose dependent rect. 20 6
290 165.80 temperature 10.0 270 > th dose dependent rect. 20 18
305 165.95 precipitation 0.1 270 < th dose independent rect. 2 18
306 165.95 precipitation 0.1 270 < th dose dependent rect. 2 18
307 165.98 wind 9.0 270 < th dose independent rect. 3 16
308 166.02 radiation 40.0 90 < th dose independent rect. 4 17
315 166.19 radiation 40.0 90 < th dose dependent rect. 4 18
321 166.28 temperature 15.0 270 > th dose independent rect. 7 19
329 166.45 temperature 10.0 270 > th dose dependent rect. 20 6
340 166.57 wind 5.0 270 < th dose independent rect. 2 5
361 166.91 radiation 1.0 270 < th dose independent rect. 3 16
373 166.99 temperature 15.0 270 > th dose independent rect. 9 16
387 167.11 precipitation 0.1 270 < th dose independent rect. 2 5
390 167.11 precipitation 0.1 270 < th dose dependent rect. 2 5
400 167.33 precipitation 0.1 270 < th dose independent rect. 1 8
401 167.33 precipitation 0.1 270 < th dose dependent rect. 1 8
416 167.50 wind 1.0 270 > th dose independent rect. 15 16
417 167.53 wind 7.0 270 < th dose independent rect. 1 8
426 167.60 radiation 40.0 90 < th dose dependent rect. 15 20
453 167.81 wind 9.0 270 < th dose independent rect. 2 18
466 167.96 radiation 20.0 270 < th dose independent rect. 2 17
467 167.98 temperature 10.0 270 > th dose independent rect. 14 7
471 167.98 atmosphere 995.0 270 > th dose independent rect. 21 17
475 168.02 humidity 70.0 270 > th dose independent rect. 2 5
480 168.04 atmosphere 995.0 270 > th dose independent rect. 15 16
485 168.07 temperature 10.0 270 > th dose independent rect. 2 5
487 168.07 temperature 30.0 270 < th dose independent rect. 2 5
488 168.07 humidity 50.0 270 > th dose independent rect. 2 5
490 168.07 atmosphere 995.0 270 > th dose independent rect. 2 5
491 168.07 atmosphere 1015.0 270 < th dose independent rect. 2 5
498 168.08 temperature 10.0 270 > th dose independent rect. 1 8
500 168.08 humidity 50.0 270 > th dose independent rect. 1 8
501 168.08 atmosphere 995.0 270 > th dose independent rect. 1 8
502 168.08 atmosphere 1015.0 270 < th dose independent rect. 1 8
513 168.17 precipitation 0.1 270 < th dose independent rect. 7 19
516 168.17 precipitation 0.1 270 < th dose dependent rect. 7 19
517 168.18 wind 1.0 270 > th dose independent rect. 14 6
522 168.22 atmosphere 1015.0 270 < th dose independent rect. 14 6
533 168.35 temperature 30.0 270 < th dose independent rect. 1 8
535 168.38 atmosphere 995.0 270 > th dose independent rect. 7 19
545 168.42 temperature 10.0 270 > th dose dependent rect. 2 5
552 168.47 precipitation 0.1 270 < th dose independent rect. 9 16
554 168.47 precipitation 0.1 270 < th dose dependent rect. 9 16
563 168.49 atmosphere 1010.0 90 < th dose independent rect. 9 7
574 168.56 radiation 20.0 270 < th dose dependent rect. 3 4
578 168.59 temperature 10.0 90 > th dose dependent rect. 22 17
581 168.62 atmosphere 995.0 90 > th dose independent rect. 17 15
586 168.69 wind 5.0 270 < th dose independent rect. 3 3
589 168.70 precipitation 0.1 270 < th dose independent rect. 3 3
591 168.70 precipitation 0.1 270 < th dose dependent rect. 3 3
597 168.72 precipitation 0.1 270 < th dose independent rect. 21 17
599 168.72 precipitation 0.1 270 < th dose dependent rect. 21 17
610 168.76 radiation 40.0 270 < th dose independent rect. 13 8
612 168.77 temperature 15.0 270 > th dose independent rect. 6 21
628 168.87 radiation 40.0 10 < th dose dependent rect. 5 17
629 168.88 radiation 40.0 270 < th dose independent rect. 14 6
637 168.93 temperature 10.0 1440 > th dose independent rect. 10 8
640 168.93 temperature 10.0 1440 > th dose independent rect. 18 16
664 169.07 wind 9.0 270 < th dose dependent rect. 19 7
689 169.25 humidity 50.0 270 > th dose independent rect. 20 18
696 169.28 temperature 10.0 270 > th dose dependent rect. 3 3
722 169.47 radiation 20.0 90 < th dose independent rect. 4 18
730 169.53 precipitation 0.1 10 < th dose independent rect. 17 16
731 169.53 precipitation 0.1 10 < th dose dependent rect. 17 16
748 169.65 atmosphere 995.0 270 > th dose independent rect. 9 16
758 169.77 atmosphere 1010.0 270 < th dose independent rect. 3 3
769 169.85 temperature 10.0 270 > th dose independent rect. 3 3
771 169.85 temperature 30.0 270 < th dose independent rect. 3 3
772 169.85 humidity 50.0 270 > th dose independent rect. 3 3
775 169.85 atmosphere 995.0 270 > th dose independent rect. 3 3
804 169.93 humidity 50.0 270 > th dose independent rect. 14 6
817 170.01 wind 9.0 270 < th dose independent rect. 14 6
818 170.02 precipitation 0.1 270 < th dose independent rect. 14 6
820 170.02 precipitation 0.1 270 < th dose dependent rect. 14 6
832 170.07 wind 1.0 270 > th dose dependent rect. 14 6
912 170.38 precipitation 0.1 270 < th dose independent rect. 6 21
913 170.38 precipitation 0.1 270 < th dose dependent rect. 6 21
939 170.52 atmosphere 1015.0 270 < th dose independent rect. 20 6
974 170.67 humidity 50.0 270 > th dose independent rect. 2 17
989 170.75 wind 9.0 270 < th dose dependent rect. 2 5