Os03g0833900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cytosine deaminase (EC 3.5.4.1).
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Os03g0833900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cytosine deaminase (EC 3.5.4.1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.18 | 0.355 | 11.1 | -0.454 | 0.753 | -1.63 | -0.252 | 1.59 | -0.112 | 21.8 | 24.73 | 783 | -- | -- |
| 61.76 | 0.366 | 11 | -0.418 | 0.781 | -1.7 | -0.874 | -- | -0.0791 | 21.9 | 24.3 | 832 | -- | -- |
| 57.4 | 0.353 | 11.1 | -0.46 | 0.764 | -1.62 | -- | 1.68 | -0.116 | 21.8 | 24.69 | 784 | -- | -- |
| 62.45 | 0.368 | 11 | -0.308 | 0.803 | -1.76 | -- | -- | -0.0905 | 22.1 | 24.2 | 816 | -- | -- |
| 78.02 | 0.411 | 11.1 | -0.818 | -- | -2.22 | -- | 3 | -0.244 | -- | 31.06 | 757 | -- | -- |
| 107.04 | 0.485 | 11 | 0.306 | 0.977 | -- | -0.676 | -- | 0.305 | 22 | -- | -- | -- | -- |
| 108.82 | 0.489 | 11 | 0.332 | 0.98 | -- | -- | -- | 0.306 | 22 | -- | -- | -- | -- |
| 85.37 | 0.43 | 11 | -0.289 | -- | -2.22 | -- | -- | -0.165 | -- | 28.66 | 773 | -- | -- |
| 62.5 | 0.368 | 11 | -- | 0.839 | -1.67 | -- | -- | -0.0408 | 22 | 24.12 | 835 | -- | -- |
| 166.57 | 0.603 | 10.9 | 0.344 | -- | -- | -- | -- | 0.307 | -- | -- | -- | -- | -- |
| 111.74 | 0.494 | 11 | -- | 0.981 | -- | -- | -- | 0.269 | 22 | -- | -- | -- | -- |
| 87.15 | 0.435 | 11 | -- | -- | -2.09 | -- | -- | -0.0987 | -- | 28.9 | 746 | -- | -- |
| 169.7 | 0.608 | 10.9 | -- | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.41 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 5 | 44.67 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 6 | 45.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 9 | 45.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 161 | 49.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 185 | 49.84 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 204 | 50.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 205 | 50.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 523 | 54.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 534 | 54.61 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 705 | 55.97 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 745 | 56.23 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 828 | 56.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 3 |
| 844 | 56.79 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 959 | 57.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 1 |