BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0816700 Os03g0816700|AK107781
         (236 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0816700  Protein of unknown function DUF567 family protein   411   e-115
Os03g0816800  Protein of unknown function DUF567 family protein   145   2e-35
Os07g0230700  Protein of unknown function DUF567 family protein   107   7e-24

>Os03g0816700 Protein of unknown function DUF567 family protein
          Length = 236

 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/236 (86%), Positives = 205/236 (86%)

Query: 1   HFIIEVYFNTRSPQRRRAERKPTTRMXXXXXXXXXXXXXRHCXXXXXXXXXXRVIGTTER 60
           HFIIEVYFNTRSPQRRRAERKPTTRM             RHC          RVIGTTER
Sbjct: 1   HFIIEVYFNTRSPQRRRAERKPTTRMAAAAAPTVVVVDARHCAAEATAFAVARVIGTTER 60

Query: 61  DFAVTDAAGAVVMRLEGAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWHAFRGDSTSR 120
           DFAVTDAAGAVVMRLEGAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWHAFRGDSTSR
Sbjct: 61  DFAVTDAAGAVVMRLEGAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWHAFRGDSTSR 120

Query: 121 RSVLFSVVKESVVQVRTKIFVYLGGYRSADQVPDFVIGGNYYGGACTVFAGNXXXXXXXX 180
           RSVLFSVVKESVVQVRTKIFVYLGGYRSADQVPDFVIGGNYYGGACTVFAGN        
Sbjct: 121 RSVLFSVVKESVVQVRTKIFVYLGGYRSADQVPDFVIGGNYYGGACTVFAGNSDSDADAA 180

Query: 181 IAQITRPNLAGTLVGLTRSVYTARINPGIDQAFILSLVVILHEMHHCNTSSRNWGL 236
           IAQITRPNLAGTLVGLTRSVYTARINPGIDQAFILSLVVILHEMHHCNTSSRNWGL
Sbjct: 181 IAQITRPNLAGTLVGLTRSVYTARINPGIDQAFILSLVVILHEMHHCNTSSRNWGL 236



>Os03g0816800 Protein of unknown function DUF567 family protein
          Length = 200

 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 118/177 (66%), Gaps = 11/177 (6%)

Query: 53  RVIGTTERDFAVTDAA-GAVVMRLEGAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWH 111
           + +  +  DF VTDAA GAVV+R++G +FSLR+R LL DA RRPVLT+ +S  +M+  W 
Sbjct: 28  KTLSLSGSDFTVTDAATGAVVLRVDGVLFSLRRRCLLADADRRPVLTVQESAMVMNRRWK 87

Query: 112 AFRGDSTSRRSVLFSVVKESVVQV--RTKIFVYLGGYRSADQVPDFVIGGNYYGGACTVF 169
            FRG+STSRR +LF+VVK S +Q+   TK+ V+L     A+Q  DF + G+Y+ GAC V 
Sbjct: 88  VFRGESTSRRDLLFTVVKPSAIQLWGSTKVSVFLAS-NDAEQASDFRVTGSYHDGACAVS 146

Query: 170 AGNXXXXXXXXIAQITRP-NLAGTLVGLTRSVYTARINPGIDQAFILSLVVILHEMH 225
            G+        IA+I R  ++A  L+G  ++ Y+  +N GID AFI++LVV+L EMH
Sbjct: 147 LGD----SDTVIAKIDRRFSVASALLG--KNAYSVTVNAGIDYAFIVALVVVLDEMH 197



>Os07g0230700 Protein of unknown function DUF567 family protein
          Length = 214

 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 102/174 (58%), Gaps = 7/174 (4%)

Query: 53  RVIGTTERDFAVTDAAGAVVMRLEGAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWHA 112
           + I  T+ DF VTDA   VV+ ++G +FS+R R +L DA  +P+L+M +    M + W  
Sbjct: 42  KSISLTDGDFTVTDANDNVVLNVKGTLFSVRHRRVLHDAVGQPLLSMQEKILSMHNRWEV 101

Query: 113 FRGDSTSRRSVLFSVVKESVVQV-RTKIFVYLGGYRSADQVPDFVIGGNYYGGACTVFAG 171
           +RGDS      LF+V K S++Q+ +T++ ++L G  +A+QV DF I G+Y   +   + G
Sbjct: 102 YRGDSAHSCDKLFTVKKSSMLQLMKTEMDIFLAG-NTAEQVCDFKIKGSYCDRSSAFYLG 160

Query: 172 NXXXXXXXXIAQITRPNLAGTLVGLTRSVYTARINPGIDQAFILSLVVILHEMH 225
                    IAQ+ R + A ++V L R V++  + P +D  FI +LV IL ++H
Sbjct: 161 K----SNTIIAQMNRKHTAASVV-LGRDVFSITVFPQVDYVFIAALVAILDDVH 209



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,103,872
Number of extensions: 202931
Number of successful extensions: 447
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 3
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)