BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0806900 Os03g0806900|AK121708
(126 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0806900 Similar to Cytochrome-C reductase 14 kDa subun... 235 7e-63
Os07g0205000 Similar to Cytochrome-C reductase 14 kDa subun... 196 3e-51
Os08g0246400 Similar to Ubiquinol-cytochrome c reductase co... 138 9e-34
>Os03g0806900 Similar to Cytochrome-C reductase 14 kDa subunit (EC 1.10.2.2)
(Fragment)
Length = 126
Score = 235 bits (599), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 116/126 (92%), Positives = 116/126 (92%)
Query: 1 MSSMLSAFSQWFVNPRRNPLARLHMQAISSRLRKYGLRYDDLYDPKHDLDIKEALERLPR 60
MSSMLSAFSQWFVNPRRNPLARLHMQAISSRLRKYGLRYDDLYDPKHDLDIKEALERLPR
Sbjct: 1 MSSMLSAFSQWFVNPRRNPLARLHMQAISSRLRKYGLRYDDLYDPKHDLDIKEALERLPR 60
Query: 61 EVVDARHQRLKRAMDLSMKHQYLSENDQAQQTPFRGYLSDMMDLVXXXXXXXXXXGALPL 120
EVVDARHQRLKRAMDLSMKHQYLSENDQAQQTPFRGYLSDMMDLV GALPL
Sbjct: 61 EVVDARHQRLKRAMDLSMKHQYLSENDQAQQTPFRGYLSDMMDLVKKERLEREELGALPL 120
Query: 121 HQRTLP 126
HQRTLP
Sbjct: 121 HQRTLP 126
>Os07g0205000 Similar to Cytochrome-C reductase 14 kDa subunit (EC 1.10.2.2)
(Fragment)
Length = 175
Score = 196 bits (499), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/126 (75%), Positives = 104/126 (82%)
Query: 1 MSSMLSAFSQWFVNPRRNPLARLHMQAISSRLRKYGLRYDDLYDPKHDLDIKEALERLPR 60
S MLS+ S W VNPRRNPLARLHM A++SRLRKYGLRYDDLYDP HDLDIKEAL RLPR
Sbjct: 50 FSKMLSSLSAWLVNPRRNPLARLHMNAVASRLRKYGLRYDDLYDPYHDLDIKEALARLPR 109
Query: 61 EVVDARHQRLKRAMDLSMKHQYLSENDQAQQTPFRGYLSDMMDLVXXXXXXXXXXGALPL 120
EVVDAR+QRLKRAMDLSMKHQYL + QA+QTPFRGYLSDM+ LV GALPL
Sbjct: 110 EVVDARNQRLKRAMDLSMKHQYLPADAQAKQTPFRGYLSDMLALVKKESAEREALGALPL 169
Query: 121 HQRTLP 126
+QRT+P
Sbjct: 170 YQRTIP 175
>Os08g0246400 Similar to Ubiquinol-cytochrome c reductase complex 14 kDa protein
(EC 1.10.2.2) (CR14)
Length = 127
Score = 138 bits (348), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/99 (70%), Positives = 76/99 (76%), Gaps = 2/99 (2%)
Query: 4 MLSAFSQWFVNPRRNPLARLHMQAISSRLRKYGLRYDDLYDPK--HDLDIKEALERLPRE 61
MLS S W VN RRNPLARLHM ++S L KYGLRYDDL+D H LDIKEAL RLPRE
Sbjct: 1 MLSCLSAWLVNLRRNPLARLHMNVVASHLHKYGLRYDDLFDAYQYHGLDIKEALARLPRE 60
Query: 62 VVDARHQRLKRAMDLSMKHQYLSENDQAQQTPFRGYLSD 100
VVDA +QRLKR MDLS KHQYL ++QA QT RGYLSD
Sbjct: 61 VVDAHNQRLKRTMDLSTKHQYLPADEQAMQTTLRGYLSD 99
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,734,776
Number of extensions: 129074
Number of successful extensions: 324
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 3
Length of query: 126
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 37
Effective length of database: 12,388,755
Effective search space: 458383935
Effective search space used: 458383935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)