BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0796400 Os03g0796400|AK109800
(298 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0796400 ENT domain containing protein 551 e-157
Os07g0179500 Conserved hypothetical protein 99 4e-21
Os02g0204500 ENT domain containing protein 66 3e-11
>Os03g0796400 ENT domain containing protein
Length = 298
Score = 551 bits (1419), Expect = e-157, Method: Compositional matrix adjust.
Identities = 267/287 (93%), Positives = 267/287 (93%)
Query: 1 MKLKNRAEEIFRDGDLIFTSERNLGARNVQMDYDIVRANQPAVVQTRCRWIIGDVTEVLD 60
MKLKNRAEEIFRDGDLIFTSERNLGARNVQMDYDIVRANQPAVVQTRCRWIIGDVTEVLD
Sbjct: 1 MKLKNRAEEIFRDGDLIFTSERNLGARNVQMDYDIVRANQPAVVQTRCRWIIGDVTEVLD 60
Query: 61 RNTWKLGKIAKMLKNNYFVIRLADCIQLKEFHISSLRVPASPHSNNQYSVADKKSEAKLA 120
RNTWKLGKIAKMLKNNYFVIRLADCIQLKEFHISSLRVPASPHSNNQYSVADKKSEAKLA
Sbjct: 61 RNTWKLGKIAKMLKNNYFVIRLADCIQLKEFHISSLRVPASPHSNNQYSVADKKSEAKLA 120
Query: 121 QRGQIPSDALPGRTNKKRKSTADTSFNPRRRTSRPENASRACVLDGSTTQNRFQFIREEA 180
QRGQIPSDALPGRTNKKRKSTADTSFNPRRRTSRPENASRACVLDGSTTQNRFQFIREEA
Sbjct: 121 QRGQIPSDALPGRTNKKRKSTADTSFNPRRRTSRPENASRACVLDGSTTQNRFQFIREEA 180
Query: 181 ECSVASCSINDPDTTFTNAKKLQSLGFPDDAMSACPCTSGMXXXXXXXXXXXXXXXXXXX 240
ECSVASCSINDPDTTFTNAKKLQSLGFPDDAMSACPCTSGM
Sbjct: 181 ECSVASCSINDPDTTFTNAKKLQSLGFPDDAMSACPCTSGMEDDDAAAAAADEDDDDEPA 240
Query: 241 XIAVHELELEAYQSTMRALYASGPLTWEQESLLTNLRLSLNISNEEH 287
IAVHELELEAYQSTMRALYASGPLTWEQESLLTNLRLSLNISNEEH
Sbjct: 241 AIAVHELELEAYQSTMRALYASGPLTWEQESLLTNLRLSLNISNEEH 287
>Os07g0179500 Conserved hypothetical protein
Length = 300
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%), Gaps = 2/80 (2%)
Query: 34 DIVRANQPAVVQTRCRWIIGDVTEVLDRNTWKLGKIAKMLKNNYFVIRLADCIQLKEFHI 93
D VR ++P V + RW++GD+TEVLDRN+W+LGKIAK+LK++YFVIR+ C+Q++EFHI
Sbjct: 7 DDVRTHRP-VGMRKGRWVLGDITEVLDRNSWRLGKIAKVLKDDYFVIRVTGCMQMREFHI 65
Query: 94 SSLRVPASPHSNNQYSVADK 113
S LR P + H Q +V DK
Sbjct: 66 SCLRFPHAYHG-KQSAVIDK 84
>Os02g0204500 ENT domain containing protein
Length = 126
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 38/44 (86%)
Query: 244 VHELELEAYQSTMRALYASGPLTWEQESLLTNLRLSLNISNEEH 287
H LEL AY++T+ ALYASG ++WEQE+++TNLRL+LNIS +EH
Sbjct: 68 THLLELHAYRATLMALYASGSISWEQEAMMTNLRLTLNISTDEH 111
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,570,252
Number of extensions: 307322
Number of successful extensions: 768
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 3
Length of query: 298
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 198
Effective length of database: 11,814,401
Effective search space: 2339251398
Effective search space used: 2339251398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)