Os02g0204500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ENT domain containing protein.
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Os02g0204500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ENT domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.83 | 0.322 | 8.3 | -0.52 | 2.14 | -0.121 | -0.209 | 1.38 | -0.443 | 6.06 | 3 | 7 | -- | -- |
| 50.73 | 0.334 | 8.28 | -0.413 | 2.14 | -0.137 | -0.222 | -- | -0.377 | 5.88 | 18.59 | 8 | -- | -- |
| 51 | 0.335 | 8.28 | -0.389 | 2.14 | -0.0647 | -- | 0.44 | -0.376 | 6.04 | 36.88 | 14 | -- | -- |
| 50.35 | 0.33 | 8.26 | -0.378 | 2.15 | -0.362 | -- | -- | -0.353 | 6.06 | 59.09 | 27 | -- | -- |
| 286.32 | 0.788 | 8.3 | -0.283 | -- | 0.0714 | -- | 1.59 | -0.325 | -- | 54.62 | 4 | -- | -- |
| 51.61 | 0.337 | 8.28 | -0.402 | 2.14 | -- | -0.218 | -- | -0.381 | 6.08 | -- | -- | -- | -- |
| 51.72 | 0.337 | 8.28 | -0.404 | 2.13 | -- | -- | -- | -0.38 | 6.08 | -- | -- | -- | -- |
| 286.12 | 0.788 | 8.31 | -0.309 | -- | -0.507 | -- | -- | -0.314 | -- | 58.99 | 23 | -- | -- |
| 53.67 | 0.341 | 8.27 | -- | 2.15 | -0.466 | -- | -- | -0.333 | 5.98 | 59.7 | 28 | -- | -- |
| 287.78 | 0.793 | 8.32 | -0.343 | -- | -- | -- | -- | -0.332 | -- | -- | -- | -- | -- |
| 56.03 | 0.35 | 8.27 | -- | 2.13 | -- | -- | -- | -0.335 | 6.09 | -- | -- | -- | -- |
| 288.49 | 0.791 | 8.31 | -- | -- | -0.602 | -- | -- | -0.277 | -- | 58.93 | 26 | -- | -- |
| 290.88 | 0.796 | 8.31 | -- | -- | -- | -- | -- | -0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.65 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 4 |
| 3 | 42.87 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 1 |
| 10 | 43.70 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 10 |
| 28 | 44.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 30 | 44.78 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 4 |
| 37 | 44.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 39 | 44.91 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 2 |
| 44 | 44.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 46 | 45.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 48 | 45.08 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 8 |
| 55 | 45.13 | temperature | 20 | 30 | > th | dose independent | rect. | 23 | 12 |
| 66 | 45.27 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 88 | 45.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 91 | 45.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 107 | 45.54 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 112 | 45.56 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 18 |
| 116 | 45.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 22 |
| 121 | 45.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 19 |
| 130 | 45.60 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 21 |
| 155 | 45.64 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 9 |
| 158 | 45.64 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 17 |
| 161 | 45.64 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 163 | 45.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 182 | 45.67 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 190 | 45.67 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 20 |
| 194 | 45.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 197 | 45.68 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 9 |
| 205 | 45.68 | humidity | 90 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 214 | 45.69 | humidity | 90 | 14400 | > th | dose independent | sin | 4 | NA |
| 215 | 45.69 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 244 | 45.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 266 | 45.71 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 16 |
| 271 | 45.71 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 22 |
| 295 | 45.72 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 302 | 45.73 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 12 |
| 320 | 45.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 358 | 45.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 391 | 45.77 | humidity | 90 | 14400 | < th | dose independent | sin | 5 | NA |
| 392 | 45.77 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 417 | 45.78 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 437 | 45.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 4 |
| 444 | 45.79 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 14 |
| 448 | 45.79 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 479 | 45.81 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 14 |
| 533 | 45.83 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 16 |
| 547 | 45.84 | humidity | 90 | 14400 | > th | dose independent | sin | 15 | NA |
| 549 | 45.84 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 573 | 45.85 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 653 | 45.89 | humidity | 90 | 14400 | < th | dose independent | sin | 14 | NA |
| 684 | 45.90 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 703 | 45.91 | humidity | 90 | 14400 | > th | dose dependent | sin | 1 | NA |
| 733 | 45.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 803 | 45.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 857 | 46.02 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 12 | 11 |
| 863 | 46.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 892 | 46.05 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 895 | 46.06 | temperature | 10 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 900 | 46.06 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 913 | 46.07 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 917 | 46.07 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 12 |
| 933 | 46.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 970 | 46.10 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 984 | 46.11 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 988 | 46.12 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 3 |