BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0204500 Os02g0204500|AK068229
         (126 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32440.2  | chr4:15657295-15659354 FORWARD LENGTH=394           57   2e-09
AT5G20030.1  | chr5:6764971-6766036 REVERSE LENGTH=327             51   2e-07

>AT4G32440.2 | chr4:15657295-15659354 FORWARD LENGTH=394
          Length = 393

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 5/70 (7%)

Query: 44  TDDAEASVSGRESP----APVNDGLKEKTHLLELHAYRATLMALYASGSISWEQEAMMTN 99
           + DAE+S    E P    + V DG +      EL++YR+TL  L++SG +SWEQEA +T+
Sbjct: 290 SSDAESSCGLGEEPRWKHSSVGDGARNSCRS-ELYSYRSTLGELFSSGPLSWEQEASLTD 348

Query: 100 LRLTLNISTD 109
           LRL+LNIS D
Sbjct: 349 LRLSLNISDD 358



>AT5G20030.1 | chr5:6764971-6766036 REVERSE LENGTH=327
          Length = 326

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 68  THLLELHAYRATLMALYASGSI-SWEQEAMMTNLRLTLNISTD 109
            H LEL AYR+++  L+ASG I +WEQE  +TNLRL LNIS +
Sbjct: 265 VHRLELDAYRSSIERLHASGPIITWEQETWITNLRLKLNISNE 307



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.126    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,510,634
Number of extensions: 91907
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 2
Length of query: 126
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 39
Effective length of database: 8,721,377
Effective search space: 340133703
Effective search space used: 340133703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)