BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0794800 Os03g0794800|AK070933
(988 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0794800 Similar to XRN3 1936 0.0
Os01g0872700 Putative 5-3 exonuclease domain containing pro... 532 e-151
Os02g0481900 Putative 5-3 exonuclease domain containing pro... 486 e-137
Os11g0157000 Integrase, catalytic region domain containing ... 209 1e-53
Os11g0157050 156 7e-38
Os07g0238700 Similar to Glutamate dehydrogenase (EC 1.4.1.3... 124 5e-28
>Os03g0794800 Similar to XRN3
Length = 988
Score = 1936 bits (5016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 950/988 (96%), Positives = 950/988 (96%)
Query: 1 MGVPAFYRWLADRYPQTVSDAVEEEPVELEPGAFVPVDLRRPNPNGLEFDNLYLDMNGII 60
MGVPAFYRWLADRYPQTVSDAVEEEPVELEPGAFVPVDLRRPNPNGLEFDNLYLDMNGII
Sbjct: 1 MGVPAFYRWLADRYPQTVSDAVEEEPVELEPGAFVPVDLRRPNPNGLEFDNLYLDMNGII 60
Query: 61 HPCFHPEGRPAPTTYDEVFKSIFAYIDHLFGLVRPRKLIYMAIDGVAPRAKMNQQRSXXX 120
HPCFHPEGRPAPTTYDEVFKSIFAYIDHLFGLVRPRKLIYMAIDGVAPRAKMNQQRS
Sbjct: 61 HPCFHPEGRPAPTTYDEVFKSIFAYIDHLFGLVRPRKLIYMAIDGVAPRAKMNQQRSRRF 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGRTLVAKEKSEAIDSNVITPGTPFMFVLSSALQYYIQ 180
GRTLVAKEKSEAIDSNVITPGTPFMFVLSSALQYYIQ
Sbjct: 121 RAAKDAADAAAEEERLRKEFEAEGRTLVAKEKSEAIDSNVITPGTPFMFVLSSALQYYIQ 180
Query: 181 LRLNHTPGWQSVKVMLSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
LRLNHTPGWQSVKVMLSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
Sbjct: 181 LRLNHTPGWQSVKVMLSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
Query: 241 SLATHEVHFSILREVITMPGQHEKCFLCGQVGHLAAECRGSGQADKTVELPPIHKKKYQF 300
SLATHEVHFSILREVITMPGQHEKCFLCGQVGHLAAECRGSGQADKTVELPPIHKKKYQF
Sbjct: 241 SLATHEVHFSILREVITMPGQHEKCFLCGQVGHLAAECRGSGQADKTVELPPIHKKKYQF 300
Query: 301 LNIWVLREYLEKDLEIVDPPFKINFERXXXXXXXXXXXXGNDFLPHMPTLEIREGAINLL 360
LNIWVLREYLEKDLEIVDPPFKINFER GNDFLPHMPTLEIREGAINLL
Sbjct: 301 LNIWVLREYLEKDLEIVDPPFKINFERVVDDFVFMCFFVGNDFLPHMPTLEIREGAINLL 360
Query: 361 MNIYRREFTSMGGYLTDGGEVLLDRVEHFIQSVAVHEEQIFQKRARIQKAIQNNEERNRV 420
MNIYRREFTSMGGYLTDGGEVLLDRVEHFIQSVAVHEEQIFQKRARIQKAIQNNEERNRV
Sbjct: 361 MNIYRREFTSMGGYLTDGGEVLLDRVEHFIQSVAVHEEQIFQKRARIQKAIQNNEERNRV 420
Query: 421 QTENSEDNQYVDKVKLGEPGYRVRYYAEKFKEEAELKPIDQVQRDVVQKYVEGLCWVMRY 480
QTENSEDNQYVDKVKLGEPGYRVRYYAEKFKEEAELKPIDQVQRDVVQKYVEGLCWVMRY
Sbjct: 421 QTENSEDNQYVDKVKLGEPGYRVRYYAEKFKEEAELKPIDQVQRDVVQKYVEGLCWVMRY 480
Query: 481 YYQGVCSWQWFYPYHYAPFASDLKCLAELEITFFLGQPFKPFDQLMGTLPAASSNALPKY 540
YYQGVCSWQWFYPYHYAPFASDLKCLAELEITFFLGQPFKPFDQLMGTLPAASSNALPKY
Sbjct: 481 YYQGVCSWQWFYPYHYAPFASDLKCLAELEITFFLGQPFKPFDQLMGTLPAASSNALPKY 540
Query: 541 YGDLMNDPNSPLKSFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLLAETQKLEETLTDEE 600
YGDLMNDPNSPLKSFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLLAETQKLEETLTDEE
Sbjct: 541 YGDLMNDPNSPLKSFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLLAETQKLEETLTDEE 600
Query: 601 RFRNRTMFDILYVRETHPLAAQIAFLYQMCSQSPNASYIIPIDPAASGGMNGFLCLSERN 660
RFRNRTMFDILYVRETHPLAAQIAFLYQMCSQSPNASYIIPIDPAASGGMNGFLCLSERN
Sbjct: 601 RFRNRTMFDILYVRETHPLAAQIAFLYQMCSQSPNASYIIPIDPAASGGMNGFLCLSERN 660
Query: 661 CYSIVVTSPVKGFNGIAQNRVLNATYLNPQYHKHIPEPPEGVIIPAKILKPSDFKPFPIL 720
CYSIVVTSPVKGFNGIAQNRVLNATYLNPQYHKHIPEPPEGVIIPAKILKPSDFKPFPIL
Sbjct: 661 CYSIVVTSPVKGFNGIAQNRVLNATYLNPQYHKHIPEPPEGVIIPAKILKPSDFKPFPIL 720
Query: 721 WHEDNSRRQPRERPQVSGALSGSVLGEAAHRLVKNSLQIKSGYSAGLLDMPYRGAPYGPG 780
WHEDNSRRQPRERPQVSGALSGSVLGEAAHRLVKNSLQIKSGYSAGLLDMPYRGAPYGPG
Sbjct: 721 WHEDNSRRQPRERPQVSGALSGSVLGEAAHRLVKNSLQIKSGYSAGLLDMPYRGAPYGPG 780
Query: 781 NRPRPAGPLGYERGFVENSYNGHMSRSVPNSHPQFFGDAQANRQNVRILERPNYRNNDSA 840
NRPRPAGPLGYERGFVENSYNGHMSRSVPNSHPQFFGDAQANRQNVRILERPNYRNNDSA
Sbjct: 781 NRPRPAGPLGYERGFVENSYNGHMSRSVPNSHPQFFGDAQANRQNVRILERPNYRNNDSA 840
Query: 841 IHSGMSQLTIQDGPRMHQNNRMQNSGFSPNQPHPNQYAGFPPQRPMQNSGFTPQRPAQYS 900
IHSGMSQLTIQDGPRMHQNNRMQNSGFSPNQPHPNQYAGFPPQRPMQNSGFTPQRPAQYS
Sbjct: 841 IHSGMSQLTIQDGPRMHQNNRMQNSGFSPNQPHPNQYAGFPPQRPMQNSGFTPQRPAQYS 900
Query: 901 GFPHQRPVQIGLQHQPAVNGIQPPLPPSAWIGRPISGVPAGVPAKQDPRMAMDRQPKQDN 960
GFPHQRPVQIGLQHQPAVNGIQPPLPPSAWIGRPISGVPAGVPAKQDPRMAMDRQPKQDN
Sbjct: 901 GFPHQRPVQIGLQHQPAVNGIQPPLPPSAWIGRPISGVPAGVPAKQDPRMAMDRQPKQDN 960
Query: 961 SRSQHDKRQQATKVVYRVKGQGPNGLSE 988
SRSQHDKRQQATKVVYRVKGQGPNGLSE
Sbjct: 961 SRSQHDKRQQATKVVYRVKGQGPNGLSE 988
>Os01g0872700 Putative 5-3 exonuclease domain containing protein
Length = 1068
Score = 532 bits (1371), Expect = e-151, Method: Compositional matrix adjust.
Identities = 276/432 (63%), Positives = 320/432 (74%), Gaps = 7/432 (1%)
Query: 1 MGVPAFYRWLADRYPQTVSDAVEEEPVELEPGAFVPVDLRRPNPNGLEFDNLYLDMNGII 60
MGVPAFYRWLA++YP V D VEEE VE+E VPVD +PNPNGLEFDNLYLDMNGII
Sbjct: 1 MGVPAFYRWLAEKYPMVVVDVVEEEAVEIEGVK-VPVDTSKPNPNGLEFDNLYLDMNGII 59
Query: 61 HPCFHPEGRPAPTTYDEVFKSIFAYIDHLFGLVRPRKLIYMAIDGVAPRAKMNQQRSXXX 120
HPCFHPE RP+PTT+ EVF+ +F YID LF +VRPRKL+YMAIDGVAPRAKMNQQRS
Sbjct: 60 HPCFHPEDRPSPTTFAEVFQCMFDYIDRLFVMVRPRKLMYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGRTLVAKEKSEAIDSNVITPGTPFMFVLSSALQYYIQ 180
GR L K++S+ DSNVITPGT FM VLS ALQYYI
Sbjct: 120 RAAKDAADAAAEEERLREEFEREGRKLPPKQQSQTCDSNVITPGTEFMAVLSIALQYYIH 179
Query: 181 LRLNHTPGWQSVKVMLSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
LRLN+ PGW+ VKV+LSD+NVPGEGEHKIMSYIR QRNLPGF+PNTRHCLYGLDADLIML
Sbjct: 180 LRLNYDPGWKQVKVILSDANVPGEGEHKIMSYIRGQRNLPGFNPNTRHCLYGLDADLIML 239
Query: 241 SLATHEVHFSILREVITMPGQHEKCFLCGQVGHLAAECRG-----SGQADKTVELPPIHK 295
+LATHEVHFSILREV+ PGQ +KCFLCGQVGHLAA C G +G+ D+ E + K
Sbjct: 240 ALATHEVHFSILREVVYTPGQQDKCFLCGQVGHLAANCEGKVKRKAGEFDEKGEA-IVPK 298
Query: 296 KKYQFLNIWVLREYLEKDLEIVDPPFKINFERXXXXXXXXXXXXGNDFLPHMPTLEIREG 355
K YQFLNIW LREYLE + + +PPF I+FER GNDFLPHMPTLEIREG
Sbjct: 299 KPYQFLNIWTLREYLEYEFRMQNPPFPIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREG 358
Query: 356 AINLLMNIYRREFTSMGGYLTDGGEVLLDRVEHFIQSVAVHEEQIFQKRARIQKAIQNNE 415
AINLLM +Y++EF SMGGYLTD L++VEHFIQ+V +E++IFQKRAR+ +
Sbjct: 359 AINLLMAVYKKEFPSMGGYLTDACTPDLNKVEHFIQAVGSYEDKIFQKRARLHQRQAERI 418
Query: 416 ERNRVQTENSED 427
+R + Q + +D
Sbjct: 419 KREKAQAKRGDD 430
Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/393 (53%), Positives = 253/393 (64%), Gaps = 19/393 (4%)
Query: 409 KAIQNNEERNRVQTENSEDNQYVDKVKLGEPGYRVRYYAEKFKEEAELKPIDQVQRDVVQ 468
K + + R + NSE N DK+KLGEPG+R RYY EKF + I++++RDVV
Sbjct: 512 KTMLKDALREKSDVFNSE-NPEEDKIKLGEPGWRERYYEEKFGARTPGQ-IEEIRRDVVL 569
Query: 469 KYVEGLCWVMRYYYQGVCSWQWFYPYHYAPFASDLKCLAELEITFFLGQPFKPFDQLMGT 528
KY EGLCWVM YYY+GVCSWQWFYPYHYAPFASDL L +L ITF LG PFKPFDQLMG
Sbjct: 570 KYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLSGLGQLNITFELGSPFKPFDQLMGV 629
Query: 529 LPAASSNALPKYYGDLMNDPNSPLKSFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLLAE 588
PAASS+ALP Y LM D NSP+ FYP DFE+DMNGKR++WQGIAKLPFIDE RLLAE
Sbjct: 630 FPAASSHALPVQYRQLMTDANSPIIDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLAE 689
Query: 589 TQKLEETLTDEERFRNRTMFDILYVRETHPLAAQIAFLYQMCSQSPNA---SYIIPIDPA 645
+K+E TLT EE RN MF++L+V +HPL+ I L P+ IDP+
Sbjct: 690 IKKVEHTLTPEEARRNSIMFNMLFVNGSHPLSPYIYSLNSKFGHLPDRERNEIKEKIDPS 749
Query: 646 ASGGMNGFLCLSERNCYSIVVTSPVKGFNGIAQNRVLNATYLNPQYHKHIPEPPEGVIIP 705
+SGGMNG++ L + V SPV G I N+V+ Y P HKHI PP GVIIP
Sbjct: 750 SSGGMNGYISLCSGDPCPPVFRSPVDGLEDIMDNQVICTIYKLPDSHKHIARPPVGVIIP 809
Query: 706 AKILKPSDFKPFPILWHEDNSR-------RQPRE---RPQVSGALSGSVLGEAAHRLVKN 755
K ++ +D KP P+LWHED+ R R+P E R +GA+SG LGEAAHRLV N
Sbjct: 810 KKTVEATDLKPPPVLWHEDSGRRPHDNNNRRPYENSNRQNPAGAISGRQLGEAAHRLVVN 869
Query: 756 SLQIKSGYSAGLLDMPYR----GAPYGPGNRPR 784
SL +SG MPY+ G PY G PR
Sbjct: 870 SLNARSGGQYNTPSMPYQTIMNGMPYPNGIPPR 902
>Os02g0481900 Putative 5-3 exonuclease domain containing protein
Length = 822
Score = 486 bits (1250), Expect = e-137, Method: Compositional matrix adjust.
Identities = 297/787 (37%), Positives = 418/787 (53%), Gaps = 148/787 (18%)
Query: 1 MGVPAFYRWLADRYPQTVSDAVEEEPVELEPGAFVPVDLRRPNPNGLEFDNLYLDMNGII 60
MG+P+FYRWL +RYP VS A E P + G V +DNLYLDMN II
Sbjct: 1 MGIPSFYRWLVNRYPSIVSPAKESRPAD---GIVV-------------YDNLYLDMNQII 44
Query: 61 HPCFHPEGR-------PAPTTYDEVFKSIFAYIDHLFGLVRPRKLIYMAIDGVAPRAKMN 113
H FHP+ + APTT EVF+S+F Y+D LF +VRPR+L+Y+A+DGVAP AKMN
Sbjct: 45 HYSFHPQDQMNAGTDVCAPTTVSEVFESMFDYLDRLFRIVRPRRLLYLAVDGVAPCAKMN 104
Query: 114 QQRSXXXXXXXXXXXXXXXXXXXXXXXXXXGRTLVAKEKSEAI--------DSNVITPGT 165
R GR + E + D NVITPGT
Sbjct: 105 GMRR--------------------------GRRFAWASEEEEMQKISEGVSDPNVITPGT 138
Query: 166 PFMFVLSSALQYYIQLRLNHT-PGWQSVKVMLSDSNVPGEGEHKIMSYIRLQRNLPGFDP 224
FM +S AL YYI+ RLN + PGW+ + V+LSD+NVPGEGEHKIMS+IR QR++ G+DP
Sbjct: 139 EFMEKISQALTYYIRARLNSSDPGWKHIMVILSDANVPGEGEHKIMSFIRAQRSMEGYDP 198
Query: 225 NTRHCLYGLDADLIMLSLATHEVHFSILREVITMPGQHEKCFLCGQVGHLAAECRGSGQA 284
NTRHCL+G DADLIML+LA+HEVHFSILRE
Sbjct: 199 NTRHCLFGHDADLIMLALASHEVHFSILRE----------------------------DN 230
Query: 285 DKTVELPPIHKKKYQFLNIWVLREYLEKDLEIVDPPFKINFERXXXXXXXXXXXXGNDFL 344
+ E P +K+Y FLNIWVLREYLE +L+I+DP + + ER GNDF+
Sbjct: 231 SQLTEADP--EKQYLFLNIWVLREYLEIELKILDPVCEPDIERLIDDFIFICFLMGNDFI 288
Query: 345 PHMPTLEIREGAINLLMNIYRREFTSMGGYLTDGGEVL--------LDRVEHFIQSVAVH 396
PH+P+LE++E A++LL+ +Y+ F MGGY+ + +V + R+E F ++++
Sbjct: 289 PHIPSLEMKEYALDLLIEVYKTTFNKMGGYIVNIEKVKDKHAAYLEVSRLEIFFHQLSMY 348
Query: 397 EEQIFQKRARIQK---------AIQNNEERNRVQTENSEDNQYV------DKVKLGEPGY 441
EE+IF KR +++ ++ E R++ ++++ DK++LG PG+
Sbjct: 349 EEKIFLKRYELEQESLKKSCRDVLREASESERLELSRKLEDRFFNEERPYDKLRLGLPGW 408
Query: 442 RVRYYAEKFKEEAELKPIDQVQRDVVQKYVEGLCWVMRYYYQGVCSWQWFYPYHYAPFAS 501
+ R+Y E F E I +Q D+ QKY+EGLCW+++YY V SW W+YP++ APF S
Sbjct: 409 KSRFYREYFGIETS-NEIGNLQNDMAQKYLEGLCWMLQYYLADVPSWSWYYPFYVAPFVS 467
Query: 502 DLKCLAELEITFFLGQPFKPFDQLMGTLPAASSNALPKYYGDLMNDPNSPLKSFYPKDFE 561
DLK EI+F + +P +PFDQLM LP SS ALP+ Y +M K F +
Sbjct: 468 DLKSNCRFEISFTVDKPLRPFDQLMAVLPLRSSCALPECYRKVMGR-----KEFDHPKLQ 522
Query: 562 IDMNGKRFAWQGIAKLPFIDERRLLAETQKLEETLTDEERFRNRTMFDILYVRETHPLAA 621
D GKRF W+ I+ E LL T++L++ L+ E RN + ++++ A
Sbjct: 523 ADTIGKRFLWKCIS------EEELLQATKELDKELSMHEMRRNTPRQEKIFLQRNSNAQA 576
Query: 622 QIAFLYQMCSQSPNASYIIPIDPAASG--------GM-NGFLCLSERNCYSIVVTSPVKG 672
+ Q+ + S + +PID A SG G+ NGF C SP++
Sbjct: 577 LAKVIVQLQTSSCSPEQKLPIDSAISGLGGWLSPDGLSNGFFC------------SPLQN 624
Query: 673 FNGIAQNRVLNATYLNPQYHKHIPEPPEGVIIPAKILKPSDFKPFPILWHEDNSRRQP-- 730
I ++ ++A + NP+ IP V +P K + +D +LWH R P
Sbjct: 625 LQDITNDQAISAMFFNPEAGNPIPRLLSNVKVPDKTVTEADISR-RLLWHTYPGSRPPPP 683
Query: 731 -RERPQV 736
ERP
Sbjct: 684 IVERPDT 690
>Os11g0157000 Integrase, catalytic region domain containing protein
Length = 1601
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 152/258 (58%), Gaps = 33/258 (12%)
Query: 170 VLSSALQYYIQLRLNHTPG-WQSVKVMLSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRH 228
+++ AL ++ N P + V+LSD+NVPGEGEHKIMS+IR QR G+DPNTRH
Sbjct: 799 IVAYALSVAEEIEGNAEPSTYSEAIVILSDANVPGEGEHKIMSFIRAQRGREGYDPNTRH 858
Query: 229 CLYGLDADLIMLSLATHEVHFSILREVI---------------TMPGQHEKCFLCGQVGH 273
CLYGLDADLIML+LA+HEVHFSILRE + T Q + F C
Sbjct: 859 CLYGLDADLIMLALASHEVHFSILREEVLHQNNQENTIPITPKTFTSQEAEKFKCRAWFP 918
Query: 274 LAAECRGSGQADKTVELPPIHKKKYQFLNIWVLREYLEKDLEIVDPPFKINFERXXXXXX 333
E R G+ + KK YQFLNIWVLREYLE D++I +P ++ ER
Sbjct: 919 RITEARPEGK---------LTKKPYQFLNIWVLREYLELDMKIPNPIQTLDVERMIDDFV 969
Query: 334 XXXXXXGNDFLPHMPTLEIREGAINLLMNIYRREFTSMGGYLTDGGEV--------LLDR 385
GNDF+PH+P+LEI EGAI+LL+ +Y+ F MGGY+ D +V + R
Sbjct: 970 FICFLTGNDFIPHIPSLEIHEGAIDLLIEVYKTSFNKMGGYIVDTDKVKDKHAAYLKVSR 1029
Query: 386 VEHFIQSVAVHEEQIFQK 403
+E F ++++EE+IF K
Sbjct: 1030 LEKFFHELSLYEEKIFLK 1047
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 134/292 (45%), Gaps = 68/292 (23%)
Query: 432 DKVKLGEPGYRVRYYAEKFKEEAELKPIDQVQRDVVQKYVEGLCWVMRYYYQGVCSWQWF 491
DK+KLG PG++ R++ EKF E + I ++Q ++V
Sbjct: 1203 DKIKLGSPGWKSRFFKEKFDAETK-DEIAKLQNEMVT----------------------- 1238
Query: 492 YPYHYAPFASDLKCLAELEITFFLGQPFKPFDQLMGTLPAASSNALPKYYGDLMNDPNSP 551
I+ FL + G L S ALP Y LM+ S
Sbjct: 1239 -------------------ISCFL-------NYANGIL----SFALPGCYSKLMDCDESA 1268
Query: 552 LKSFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLLAETQKLEETLTDEERFRNRTMFDIL 611
+++FYP + +ID +GKR+ WQGIAKLPFI+++ LL+ T+ E+ L E RN + +
Sbjct: 1269 IQAFYPSELDIDTDGKRYLWQGIAKLPFIEDKLLLSVTKTAEKDLAVHELRRNTVRQEKI 1328
Query: 612 YVRETHPLAAQIAFLYQMCSQSPNASY-IIPIDPAASGGMNGFLCLSERNCYSIVVTSPV 670
++R ++ LA AF +Q+ + S +PIDPA S + G+L + + + SP
Sbjct: 1329 FLRNSNALAKNEAF-----AQTSDCSLQKLPIDPATS-EIGGWLSPDDDDFSNGFCGSP- 1381
Query: 671 KGFNGIAQNRVLNATYLNPQYHKHIPEPPEGVIIPAKILKPSDFKPFPILWH 722
I + ++A + NP+ K + V +P K + +D P LWH
Sbjct: 1382 -----IENDLSISAKFFNPEAVKPATRLLQNVTVPYKTVTEADICARP-LWH 1427
>Os11g0157050
Length = 218
Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 117/212 (55%), Gaps = 23/212 (10%)
Query: 1 MGVPAFYRWLADRYPQTVSDAVEEEPV--ELEPGAFVPVDLRRPNPNGLEFDNLYLDMNG 58
MGVP+FYRWL +YP VS A +++ GA P + NLYLDMNG
Sbjct: 1 MGVPSFYRWLVGKYPAIVSPANDDDDDVGSSSNGAAAPP----------VYHNLYLDMNG 50
Query: 59 IIHPCFHPEGR-----PAPTTYDEVFKSIFAYIDHLFGLVRPRKLIYMAIDGVAPRAKMN 113
IIHPCFHP+ + P PTT +EVF S+F Y+D L +VRP L+Y+A+DGVAPRAKMN
Sbjct: 51 IIHPCFHPQDQVCPPSPVPTTLEEVFHSMFDYMDRLIRIVRPTSLLYLAVDGVAPRAKMN 110
Query: 114 QQRSXXXXXXXXXXXXXXXXXXXXXXXXXXGRTLVAKE---KSEAIDSNVITPGTPFMFV 170
QQR+ G+ ++ +E SE D NVIT GT FM
Sbjct: 111 QQRARRFKSAMAAKQAEVEENILRDRFRAEGKKVLPRETSSSSEVSDPNVITLGTEFMDK 170
Query: 171 LSSALQYYIQLRLNHTPGWQSVKVMLSDSNVP 202
LS AL+YYI+ RLN P W+ + SDS P
Sbjct: 171 LSDALKYYIRARLNSDPLWKDIN---SDSVFP 199
>Os07g0238700 Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH)
Length = 182
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 74/91 (81%), Gaps = 5/91 (5%)
Query: 1 MGVPAFYRWLADRYPQTVSDAVEEEPVELEPGAFVPVDLRRPNPNGLEFDNLYLDMNGII 60
MGV AFYRWLADRYPQTVSDAVEEEPVELEPGAFVPVDLRRPNPNGL+FDNLYLDMNGII
Sbjct: 1 MGVLAFYRWLADRYPQTVSDAVEEEPVELEPGAFVPVDLRRPNPNGLKFDNLYLDMNGII 60
Query: 61 HPCFHPEGR-----PAPTTYDEVFKSIFAYI 86
HPCFHPEG P P+ + + I I
Sbjct: 61 HPCFHPEGHARSYSPIPSVFSSSNQPILCSI 91
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 36,683,839
Number of extensions: 1742061
Number of successful extensions: 4685
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 4659
Number of HSP's successfully gapped: 10
Length of query: 988
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 877
Effective length of database: 11,240,047
Effective search space: 9857521219
Effective search space used: 9857521219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)