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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0157000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Integrase, catalytic region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0125) R2 : 0.0247
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0895 (0.0263) R2dN8 : 0.0319 R2N8 : 0.0247
σ : 0.236
deviance : 25.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.16 0.231 2.98 0.0592 0.266 0.157 0.135 -0.0401 0.0993 13 0.009996 31 -- --
24.17 0.229 2.98 0.0593 0.265 0.157 0.135 -- 0.0994 13 0.008852 31 -- --
24.21 0.229 2.98 0.08 0.267 0.157 -- -0.0767 0.106 13.1 0.009993 32 -- --
24.3 0.23 2.98 0.0614 0.265 0.156 -- -- 0.0987 13 0.001887 31 -- --
24.94 0.233 2.99 0.0321 -- -0.0868 -- -0.0992 0.0898 -- 29.61 5 -- --
24.74 0.233 2.99 0.0404 0.103 -- 0.142 -- 0.0956 14.6 -- -- -- --
24.8 0.233 2.99 0.0442 0.106 -- -- -- 0.0966 15 -- -- -- --
24.87 0.232 2.99 0.0395 -- -0.131 -- -- 0.0956 -- 60 5 -- --
24.41 0.23 2.99 -- 0.264 0.154 -- -- 0.0984 13 6.089e-05 31 -- --
25.44 0.236 2.99 0.0396 -- -- -- -- 0.0939 -- -- -- -- --
24.85 0.233 2.99 -- 0.105 -- -- -- 0.0917 15 -- -- -- --
24.91 0.232 2.99 -- -- -0.132 -- -- 0.0915 -- 60.02 5 -- --
25.48 0.236 2.99 -- -- -- -- -- 0.0895 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.53 atmosphere 1005.0 30 > th dose dependent rect. 18 1
2 19.61 temperature 30.0 30 < th dose independent rect. 18 1
3 19.62 humidity 60.0 30 > th dose dependent rect. 18 1
4 19.77 humidity 70.0 30 > th dose independent rect. 18 1
6 20.05 temperature 30.0 30 < th dose dependent rect. 18 1
15 21.67 radiation 1.0 30 < th dose dependent rect. 18 1
16 21.73 wind 5.0 30 > th dose dependent rect. 18 1
19 22.08 radiation 1.0 30 < th dose independent rect. 18 1
23 22.49 radiation 10.0 43200 < th dose dependent rect. 19 1
26 22.50 temperature 10.0 1440 > th dose independent rect. 19 1
29 22.50 temperature 30.0 1440 < th dose independent rect. 19 1
33 22.50 humidity 50.0 1440 > th dose independent rect. 19 1
35 22.50 atmosphere 995.0 1440 > th dose independent rect. 19 1
39 22.50 radiation 1.0 1440 < th dose independent rect. 19 1
59 22.50 temperature 10.0 1440 > th dose independent rect. 20 23
62 22.50 radiation 1.0 1440 < th dose dependent rect. 19 1
79 22.53 wind 5.0 30 > th dose independent rect. 18 1
80 22.54 atmosphere 1005.0 30 > th dose independent rect. 18 1
85 22.65 atmosphere 1000.0 30 > th dose independent rect. 19 23
92 22.71 wind 7.0 30 < th dose independent rect. 18 1
94 22.71 temperature 25.0 30 > th dose independent rect. 18 1
95 22.71 humidity 80.0 30 < th dose independent rect. 18 1
98 22.72 temperature 10.0 30 > th dose independent rect. 18 1
103 22.72 atmosphere 1010.0 30 < th dose independent rect. 18 1
108 22.72 precipitation 0.1 30 < th dose independent rect. 18 1
109 22.72 wind 9.0 30 < th dose independent rect. 19 23
110 22.72 temperature 10.0 30 > th dose independent rect. 19 23
111 22.72 precipitation 0.1 30 < th dose dependent rect. 18 1
113 22.73 atmosphere 995.0 30 > th dose independent rect. 18 1
119 22.80 wind 9.0 30 < th dose dependent rect. 18 1
121 22.81 precipitation 0.1 30 < th dose independent rect. 19 23
123 22.81 precipitation 0.1 30 < th dose dependent rect. 19 23
129 22.91 atmosphere 1005.0 90 > th dose dependent rect. 11 8
130 22.93 humidity 50.0 30 > th dose independent rect. 19 23
132 22.94 temperature 10.0 30 > th dose dependent rect. 18 1
134 22.99 wind 9.0 1440 < th dose independent rect. 19 1
140 23.06 atmosphere 1015.0 30 < th dose dependent rect. 18 1
167 23.25 radiation 40.0 30 < th dose dependent rect. 19 23
172 23.27 radiation 20.0 720 < th dose independent rect. 23 8
204 23.34 atmosphere 995.0 30 > th dose dependent rect. 19 16
213 23.37 humidity 90.0 30 < th dose dependent rect. 18 1
218 23.39 wind 9.0 30 < th dose dependent rect. 19 23
233 23.44 radiation 20.0 720 < th dose independent rect. 6 1
234 23.44 atmosphere 1000.0 30 > th dose independent rect. 19 16
238 23.45 radiation 30.0 30 < th dose independent rect. 19 23
243 23.47 temperature 20.0 90 > th dose dependent rect. 2 9
247 23.47 temperature 10.0 30 > th dose dependent rect. 19 23
248 23.48 radiation 30.0 30 < th dose independent rect. 19 16
250 23.49 humidity 70.0 4320 > th dose independent rect. 20 4
251 23.49 atmosphere 1010.0 10 > th dose dependent rect. 12 1
286 23.50 atmosphere 1010.0 30 < th dose independent rect. 6 12
295 23.51 humidity 70.0 4320 > th dose independent rect. 20 10
362 23.53 atmosphere 1015.0 30 < th dose independent rect. 19 23
363 23.54 temperature 25.0 270 > th dose independent rect. 6 2
400 23.57 temperature 30.0 30 < th dose independent rect. 19 23
416 23.59 temperature 25.0 10 > th dose dependent rect. 5 6
427 23.60 temperature 20.0 90 > th dose dependent rect. 5 6
455 23.61 temperature 25.0 30 > th dose dependent rect. 19 16
465 23.62 atmosphere 1010.0 30 < th dose independent rect. 8 10
466 23.62 wind 9.0 720 < th dose independent rect. 19 16
468 23.62 atmosphere 1010.0 10 > th dose dependent sin 0 NA
471 23.62 temperature 25.0 270 > th dose dependent rect. 6 2
591 23.64 humidity 70.0 720 > th dose independent rect. 23 8
592 23.64 humidity 50.0 720 > th dose independent rect. 19 16
597 23.64 wind 9.0 4320 > th dose dependent rect. 14 1
609 23.64 temperature 25.0 270 > th dose dependent rect. 1 7
655 23.64 temperature 25.0 10 > th dose dependent rect. 22 13
713 23.65 temperature 25.0 90 > th dose independent rect. 1 10
743 23.66 temperature 25.0 270 > th dose independent rect. 2 7
747 23.66 humidity 60.0 30 > th dose independent rect. 19 16
754 23.66 temperature 10.0 30 > th dose dependent rect. 19 16
765 23.67 wind 9.0 720 < th dose independent rect. 23 8
766 23.67 temperature 10.0 720 > th dose independent rect. 11 8
770 23.67 temperature 10.0 720 > th dose independent rect. 23 8
771 23.67 temperature 30.0 720 < th dose independent rect. 23 8
772 23.67 humidity 50.0 720 > th dose independent rect. 23 8
774 23.67 atmosphere 995.0 720 > th dose independent rect. 23 8
775 23.67 atmosphere 1015.0 720 < th dose independent rect. 11 8
777 23.67 temperature 10.0 720 > th dose independent rect. 7 16
778 23.67 temperature 10.0 720 > th dose independent rect. 19 16
782 23.67 temperature 30.0 30 < th dose independent rect. 19 16
783 23.67 atmosphere 995.0 720 > th dose independent rect. 19 16
875 23.68 wind 1.0 30 > th dose independent rect. 11 8
876 23.68 precipitation 0.1 30 < th dose independent rect. 11 8
890 23.68 precipitation 0.1 30 < th dose dependent rect. 11 8
912 23.69 wind 9.0 30 < th dose independent rect. 11 8
924 23.70 temperature 10.0 30 > th dose independent rect. 11 8
926 23.70 atmosphere 1005.0 30 > th dose independent rect. 11 8
927 23.70 atmosphere 1015.0 30 < th dose independent rect. 11 8
928 23.70 wind 9.0 30 < th dose independent rect. 19 16
929 23.70 temperature 10.0 30 > th dose independent rect. 19 16
946 23.71 precipitation 0.1 30 < th dose independent rect. 19 16
955 23.71 precipitation 0.1 30 < th dose dependent rect. 19 16
977 23.73 humidity 50.0 4320 > th dose independent rect. 16 1
986 23.73 radiation 1.0 30 < th dose dependent rect. 23 20
991 23.74 atmosphere 995.0 30 > th dose independent rect. 11 8
994 23.74 wind 7.0 30 < th dose independent rect. 6 12