BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0794500 Os03g0794500|AK071839
(411 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0794500 Similar to Glutamate dehydrogenase (EC 1.4.1.3... 847 0.0
Os02g0650900 Similar to Glutamate dehydrogenase 2 (EC 1.4.1... 689 0.0
Os04g0543900 Similar to Glutamate dehydrogenase (EC 1.4.1.3... 344 7e-95
Os01g0558200 Glu/Leu/Phe/Val dehydrogenase family protein 142 6e-34
AK109045 139 6e-33
AK107677 133 2e-31
Os07g0238700 Similar to Glutamate dehydrogenase (EC 1.4.1.3... 89 5e-18
>Os03g0794500 Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH)
Length = 411
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/411 (100%), Positives = 411/411 (100%)
Query: 1 MNALAATSRNFKQAAKLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDN 60
MNALAATSRNFKQAAKLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDN
Sbjct: 1 MNALAATSRNFKQAAKLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDN 60
Query: 61 ARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPGDLSISELERL 120
ARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPGDLSISELERL
Sbjct: 61 ARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPGDLSISELERL 120
Query: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNSQTMAWILDEYSKFHGYSPAVVTGKPVDLGGSLG 180
TRVFTQKIHDLIGIHTDVPAPDMGTNSQTMAWILDEYSKFHGYSPAVVTGKPVDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNSQTMAWILDEYSKFHGYSPAVVTGKPVDLGGSLG 180
Query: 181 RDAATGRGVLFATEALLAEHGKGIAGQRFVIQGFGNVGSWAAQLISEAGGKVIAISDVTG 240
RDAATGRGVLFATEALLAEHGKGIAGQRFVIQGFGNVGSWAAQLISEAGGKVIAISDVTG
Sbjct: 181 RDAATGRGVLFATEALLAEHGKGIAGQRFVIQGFGNVGSWAAQLISEAGGKVIAISDVTG 240
Query: 241 AVKNSNGLDIAKLMKHSSENRGIKGFDGGDAIDPRSLLTEECDVLIPAALGGVINKDNAN 300
AVKNSNGLDIAKLMKHSSENRGIKGFDGGDAIDPRSLLTEECDVLIPAALGGVINKDNAN
Sbjct: 241 AVKNSNGLDIAKLMKHSSENRGIKGFDGGDAIDPRSLLTEECDVLIPAALGGVINKDNAN 300
Query: 301 EIKAKYIIEAANHPTDPEADEILSKKGVLILPDILANSGGVTVSYFEWVQNIQGFMWDEE 360
EIKAKYIIEAANHPTDPEADEILSKKGVLILPDILANSGGVTVSYFEWVQNIQGFMWDEE
Sbjct: 301 EIKAKYIIEAANHPTDPEADEILSKKGVLILPDILANSGGVTVSYFEWVQNIQGFMWDEE 360
Query: 361 KVNNELKTYMTRGFRDVKEMCRSHHCDLRMGAFTLGVNRVARATVLRGWEA 411
KVNNELKTYMTRGFRDVKEMCRSHHCDLRMGAFTLGVNRVARATVLRGWEA
Sbjct: 361 KVNNELKTYMTRGFRDVKEMCRSHHCDLRMGAFTLGVNRVARATVLRGWEA 411
>Os02g0650900 Similar to Glutamate dehydrogenase 2 (EC 1.4.1.3) (GDH 2)
Length = 411
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/411 (77%), Positives = 370/411 (90%)
Query: 1 MNALAATSRNFKQAAKLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDN 60
MNALAATSRNF+QAA+LLGLDSKL+KSLLIP REIKVECTIPKDDGTLA++VGFRVQHDN
Sbjct: 1 MNALAATSRNFRQAARLLGLDSKLQKSLLIPLREIKVECTIPKDDGTLATFVGFRVQHDN 60
Query: 61 ARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPGDLSISELERL 120
+RGPMKGGIRYH EVDPDEVNALAQLMTWKTAVA +PYGGAKGGIGC+PG+LS SELERL
Sbjct: 61 SRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAVPYGGAKGGIGCTPGELSRSELERL 120
Query: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNSQTMAWILDEYSKFHGYSPAVVTGKPVDLGGSLG 180
TRVFTQKIHDLIGI+TDVPAPDMGTN+QTMAWILDEYSKFHG+SPAVVTGKP+DLGGSLG
Sbjct: 121 TRVFTQKIHDLIGINTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180
Query: 181 RDAATGRGVLFATEALLAEHGKGIAGQRFVIQGFGNVGSWAAQLISEAGGKVIAISDVTG 240
RDAATGRGV++ATEALL E+ + I+G FVIQG GNVGSWAA+LI + GGK++A+ DVTG
Sbjct: 181 RDAATGRGVMYATEALLTEYSESISGSTFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTG 240
Query: 241 AVKNSNGLDIAKLMKHSSENRGIKGFDGGDAIDPRSLLTEECDVLIPAALGGVINKDNAN 300
A++N +G+DI L+KH SE ++ F G + +D LL ECDVL+P ALGGV+N++NA
Sbjct: 241 AIRNKSGIDIPALLKHRSEGGSLEDFYGAEVMDAAELLVHECDVLVPCALGGVLNRENAA 300
Query: 301 EIKAKYIIEAANHPTDPEADEILSKKGVLILPDILANSGGVTVSYFEWVQNIQGFMWDEE 360
E+KA++IIE ANHPTD EADEIL+KKGV++LPDI ANSGGV VSYFEWVQNIQGFMWDEE
Sbjct: 301 EVKARFIIEGANHPTDTEADEILAKKGVIVLPDIYANSGGVVVSYFEWVQNIQGFMWDEE 360
Query: 361 KVNNELKTYMTRGFRDVKEMCRSHHCDLRMGAFTLGVNRVARATVLRGWEA 411
KVN EL+ YM F+++K+MC+S +C+LRMGAFTLGVNRVA+AT+LRGWEA
Sbjct: 361 KVNRELQKYMKNAFQNIKDMCKSQNCNLRMGAFTLGVNRVAKATLLRGWEA 411
>Os04g0543900 Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH)
Length = 178
Score = 344 bits (882), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 162/175 (92%), Positives = 170/175 (97%)
Query: 1 MNALAATSRNFKQAAKLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDN 60
MNALAATSRNF+QAA+LLGLDSKLEKSLLIPFREIKVECTIPKDDGTLAS++GFRVQHDN
Sbjct: 1 MNALAATSRNFRQAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFIGFRVQHDN 60
Query: 61 ARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPGDLSISELERL 120
ARGPMKGGIRYH EVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC+PG+LS SELERL
Sbjct: 61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCAPGELSTSELERL 120
Query: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNSQTMAWILDEYSKFHGYSPAVVTGKPVDL 175
TRVFTQKIHDLIG HTDVPAPDMGTNSQTMAWILDEYSKFHG+SPAVVTGKP+ L
Sbjct: 121 TRVFTQKIHDLIGAHTDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVL 175
>Os01g0558200 Glu/Leu/Phe/Val dehydrogenase family protein
Length = 640
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 156/364 (42%), Gaps = 11/364 (3%)
Query: 26 KSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALAQ 85
+ LL P R D G GFRVQ A GP +GG+R+H + LA
Sbjct: 240 ERLLEPERCFIFRVPWVDDRGEAHVNRGFRVQFSQALGPCRGGLRFHPSMTLSVAKFLAF 299
Query: 86 LMTWKTAVANIPYGGAKGGIGCSPGDLSISELERLTRVFTQKIHDLIGIHTDVPAPDMGT 145
T K A++ GGA GG P S SE+ R + F +++ +G D PA D+G
Sbjct: 300 EQTLKNALSQYKLGGAAGGSDFDPKGKSESEIMRFCQSFMDELYRYLGPDQDFPAEDVGV 359
Query: 146 NSQTMAWILDEYSKFHGYSPAVVTGKPVDLGGSLGRDAATGRGVLFATEALLAEHGKGIA 205
+ M ++ +Y + G+ TG + GS R ATG G++F +LA+ K +
Sbjct: 360 GPREMGYLFGQYRRLSGHFQGNFTGPKIFWSGSSFRTEATGYGLVFFARVVLADMNKELK 419
Query: 206 GQRFVIQGFGNVGSWAAQLISEAGGKVIAISDVTGAVKNSNGLDIAKL-------MKHSS 258
G R VI G G + + + + +SD G + ++ G D K + S
Sbjct: 420 GLRCVISGSGKIAMHVLEKLLSCEAIPVTVSDSKGYLLDTEGFDYMKYSVLRNIKAQQRS 479
Query: 259 ENRGIKGFDGGDAIDPRSLLTEECDVLIPAALGGVINKDNANEI---KAKYIIEAANHPT 315
+K + ID +E+CDV P A I++ A I + +IE +N P
Sbjct: 480 LKEYLKSYPNAKYIDDAKPWSEKCDVAFPCASQNEIDQAEALAIINSGCRVLIECSNMPC 539
Query: 316 DPEADEILSKKGVLILPDILANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTRGF- 374
+A +IL V++ P +GGV V E W E N+++ + + +
Sbjct: 540 TAQAVDILRTAKVVVAPAKATAAGGVAVGELELNPEFSLMQWSVEDFENKIQDAVKQTYD 599
Query: 375 RDVK 378
R +K
Sbjct: 600 RSIK 603
>AK109045
Length = 403
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 178/393 (45%), Gaps = 37/393 (9%)
Query: 44 DDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKG 103
D G G+RVQ ++A GP KGG+R+H V+ + L +K A+ + GG KG
Sbjct: 7 DKGECQVQKGYRVQFNSALGPYKGGLRFHPTVNLSILKFLGFEQIFKNALTGLNMGGGKG 66
Query: 104 GIGCSPGDLSISELERLTRVFTQKIHDLIGIHTDVPAPDMGTNSQTMAWILDEYSKFHGY 163
G P S +E+ + F ++++ IG TDVPA D+G + + ++ Y
Sbjct: 67 GCDFDPKGKSDNEIRKFCVAFMRELNKHIGADTDVPAGDIGVGGREIGYLFGAYRAERNR 126
Query: 164 SPAVVTGKPVDLGGSLGRDAATGRGVLFATEALL--AEHGK-GIAGQRFVIQGFGNVGSW 220
V+TGK GGSL R ATG G+++ E ++ A GK AG+R I G GNV +
Sbjct: 127 WEGVLTGKGGSWGGSLIRPEATGYGLVYYVEHMINYASGGKESFAGKRVAISGSGNVAQY 186
Query: 221 AAQLISEAGGKVIAISDVTGA-------------VKNSNGLDIAKLMKHSSENRGIKGFD 267
AA I E GG VI++SD GA + L + + + EN + +
Sbjct: 187 AALKIIELGGTVISLSDSKGALIADDDKGFTPEVINEIAALKLQRKALTALENHSFRYVE 246
Query: 268 GGDAIDPRSLLTEECDVLIPAALGGVINKDNAN---EIKAKYIIEAANHPTDPEADEIL- 323
G ++ DV +P+A +++D A E AK+I E +N EA E+
Sbjct: 247 GARPWKE----VKKVDVALPSATQNEVSEDEAKALIESGAKFIAEGSNMGCTQEAIEVFE 302
Query: 324 ----SKKGVLIL--PDILANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTRGFRDV 377
KG I P AN+GGV VS E QN Q W E+V+ +LK M F +
Sbjct: 303 AHRRENKGSAIWYAPGKAANAGGVAVSGLEMAQNSQRLSWSAEEVDEKLKGIMKDCFENC 362
Query: 378 KEMCRSHHC-------DLRMGAFTLGVNRVARA 403
+ + L GA G +VA A
Sbjct: 363 LSTAKEYFTPSEGEFPSLVGGANVAGFRKVAAA 395
>AK107677
Length = 451
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 196/438 (44%), Gaps = 48/438 (10%)
Query: 11 FKQAAKLLGLDSKLEKSLL---------------IPFREIKVECTIPKDDGTLASYVGFR 55
F+QA K L S LE S L +P R I+ D G G+R
Sbjct: 6 FEQAYKELA--STLESSTLFEKNPEYRKALEVVSVPERVIQFRVVWEDDSGKCQVNKGYR 63
Query: 56 VQHDNARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPGDLSIS 115
VQ ++A GP KGG+R H V+ + L +K A+ + GG KGG P S +
Sbjct: 64 VQFNSALGPYKGGLRLHPTVNLSILKFLGFEQIFKNALTGLNMGGGKGGADFDPKGKSDN 123
Query: 116 ELERLTRVFTQKIHDLIGIHTDVPAPDMGTNSQTMAWILDEYSKFHGYSPAVVTGKPVDL 175
E+ + F ++ IG TDVPA D+ + + ++ +Y + V+TGK ++
Sbjct: 124 EIRKFCVAFMTELSKHIGADTDVPAGDINVGGREIGYMFGQYRRLRNQWEGVLTGKGLNW 183
Query: 176 GGSLGRDAATGRGVLFATEALL--AEHGK-GIAGQRFVIQGFGNVGSWAAQLISEAGGKV 232
GGSL R ATG G+++ + ++ A GK G++ I G GNV +AA + E GG V
Sbjct: 184 GGSLIRPEATGYGLVYYVDHMINYASGGKESFKGKKVAISGSGNVAQYAALKVIELGGTV 243
Query: 233 IAISDVTGAVKNSNGL-----DIAKLMKHSSENRGIKGFDGG-----DAIDPRSLLTEEC 282
+++SD G++ + G DI+++ + + + +G + P +
Sbjct: 244 VSLSDSKGSLIATEGKGFTPEDISQIAALKLKRQALTALEGHSYNYIEGARPWKHVG-NV 302
Query: 283 DVLIPAALGGVINKDNANEIKA---KYIIEAANHPTDPEADEIL-----SKKG--VLILP 332
DV +P+A +++D A + A K+I E +N EA + S KG + P
Sbjct: 303 DVALPSATQNEVSQDEAEALIAAGCKFIAEGSNMGCTQEAIDAFENHRKSNKGSSIWYAP 362
Query: 333 DILANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTRGFRDVKEMCRSH-------H 385
AN+GGV VS E QN Q W E+V+ +L M F + + +
Sbjct: 363 GKAANAGGVAVSGLEMAQNSQRLSWTNEEVDAKLAKIMKDCFENCLATAKEYITPAEGEF 422
Query: 386 CDLRMGAFTLGVNRVARA 403
L GA G +VA A
Sbjct: 423 PSLVAGANVAGFKKVAAA 440
>Os07g0238700 Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH)
Length = 182
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/47 (87%), Positives = 45/47 (95%)
Query: 6 ATSRNFKQAAKLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASYV 52
+RNFKQAAKLLGLDSKLEK+LLIPFREIKVECT+PKDDGTLASY+
Sbjct: 123 CVARNFKQAAKLLGLDSKLEKNLLIPFREIKVECTVPKDDGTLASYM 169
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,820,285
Number of extensions: 672224
Number of successful extensions: 1508
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1503
Number of HSP's successfully gapped: 7
Length of query: 411
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 308
Effective length of database: 11,657,759
Effective search space: 3590589772
Effective search space used: 3590589772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)