Os02g0650900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutamate dehydrogenase 2 (EC 1.4.1.3) (GDH 2).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0650900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Glutamate dehydrogenase 2 (EC 1.4.1.3) (GDH 2).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.4 | 0.567 | 3 | -0.294 | 0.061 | -0.018 | 0.0461 | 1.71 | 0.0636 | 2.29 | 76.15 | 758 | -- | -- |
| 149.31 | 0.569 | 3 | -0.163 | 0.0231 | 0.135 | -0.725 | -- | 0.0919 | 20.8 | -53.1 | 206 | -- | -- |
| 145.4 | 0.562 | 3 | -0.297 | 0.06 | -0.0176 | -- | 1.73 | 0.0622 | 2.37 | 74 | 751 | -- | -- |
| 150.84 | 0.572 | 3 | -0.141 | 0.0724 | 0.181 | -- | -- | 0.0921 | 20.6 | -44.18 | 392 | -- | -- |
| 145.61 | 0.562 | 3 | -0.296 | -- | -0.0264 | -- | 1.75 | 0.0623 | -- | 74 | 749 | -- | -- |
| 149.82 | 0.574 | 3 | -0.165 | 0.00987 | -- | -0.723 | -- | 0.0887 | 20.6 | -- | -- | -- | -- |
| 151.22 | 0.576 | 3 | -0.145 | 0.0711 | -- | -- | -- | 0.0868 | 2.34 | -- | -- | -- | -- |
| 150.97 | 0.572 | 3 | -0.142 | -- | 0.14 | -- | -- | 0.0891 | -- | -126.8 | 199 | -- | -- |
| 151.29 | 0.573 | 3 | -- | 0.101 | 0.196 | -- | -- | 0.108 | 21.7 | -63.31 | 589 | -- | -- |
| 151.52 | 0.575 | 3 | -0.142 | -- | -- | -- | -- | 0.0886 | -- | -- | -- | -- | -- |
| 151.78 | 0.576 | 3 | -- | 0.0684 | -- | -- | -- | 0.103 | 2.3 | -- | -- | -- | -- |
| 151.46 | 0.573 | 3 | -- | -- | 0.161 | -- | -- | 0.11 | -- | -63.42 | 1698 | -- | -- |
| 152.05 | 0.576 | 3 | -- | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.98 | radiation | 20.0 | 10 | > th | dose independent | rect. | 7 | 1 |
| 49 | 142.79 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 69 | 143.25 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 85 | 143.40 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 100 | 143.49 | wind | 9.0 | 90 | > th | dose independent | rect. | 14 | 3 |
| 105 | 143.62 | wind | 9.0 | 90 | > th | dose dependent | rect. | 14 | 4 |
| 121 | 143.88 | wind | 9.0 | 90 | > th | dose independent | rect. | 14 | 9 |
| 139 | 143.96 | wind | 9.0 | 90 | > th | dose dependent | rect. | 14 | 9 |
| 165 | 144.14 | wind | 1.0 | 30 | < th | dose dependent | rect. | 21 | 2 |
| 169 | 144.14 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 204 | 144.23 | temperature | 25.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 217 | 144.25 | radiation | 20.0 | 10 | > th | dose independent | sin | 10 | NA |
| 219 | 144.25 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 251 | 144.33 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 254 | 144.33 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 258 | 144.33 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 264 | 144.33 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 265 | 144.33 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 286 | 144.33 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 305 | 144.46 | wind | 3.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 306 | 144.46 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 400 | 144.61 | wind | 1.0 | 10 | < th | dose dependent | rect. | 8 | 15 |
| 427 | 144.66 | wind | 9.0 | 10 | > th | dose independent | rect. | 15 | 1 |
| 435 | 144.66 | wind | 9.0 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 443 | 144.67 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 469 | 144.75 | radiation | 20.0 | 10 | < th | dose independent | sin | 10 | NA |
| 472 | 144.77 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 475 | 144.79 | wind | 9.0 | 90 | < th | dose independent | sin | 13 | NA |
| 476 | 144.79 | humidity | 70.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 478 | 144.80 | humidity | 80.0 | 720 | > th | dose independent | rect. | 1 | 16 |
| 481 | 144.81 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 482 | 144.82 | wind | 1.0 | 10 | < th | dose independent | rect. | 22 | 1 |
| 487 | 144.83 | humidity | 90.0 | 720 | < th | dose independent | rect. | 24 | 18 |
| 489 | 144.84 | humidity | 80.0 | 720 | > th | dose dependent | sin | 2 | NA |
| 537 | 144.93 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 547 | 144.97 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 558 | 144.99 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 570 | 145.04 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 572 | 145.04 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 573 | 145.04 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 576 | 145.04 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 577 | 145.04 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 578 | 145.04 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 580 | 145.04 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 585 | 145.04 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 586 | 145.04 | humidity | 90.0 | 30 | < th | dose independent | rect. | 6 | 2 |
| 588 | 145.04 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 589 | 145.04 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 594 | 145.04 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 605 | 145.07 | wind | 9.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 608 | 145.07 | wind | 9.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 642 | 145.14 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 2 |
| 662 | 145.15 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 2 |
| 669 | 145.17 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 671 | 145.18 | humidity | 90.0 | 720 | < th | dose independent | rect. | 3 | 15 |
| 674 | 145.18 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 697 | 145.22 | wind | 9.0 | 90 | > th | dose independent | sin | 14 | NA |
| 698 | 145.22 | humidity | 80.0 | 30 | < th | dose independent | rect. | 1 | 5 |
| 708 | 145.23 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 1 | 5 |
| 724 | 145.26 | wind | 9.0 | 90 | > th | dose dependent | sin | 13 | NA |
| 727 | 145.27 | humidity | 80.0 | 720 | < th | dose independent | rect. | 1 | 1 |
| 732 | 145.27 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 776 | 145.31 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 793 | 145.34 | wind | 1.0 | 30 | < th | dose dependent | rect. | 9 | 3 |
| 810 | 145.38 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 19 | 1 |
| 840 | 145.38 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 870 | 145.39 | humidity | 80.0 | 720 | > th | dose independent | sin | 3 | NA |
| 877 | 145.39 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 894 | 145.40 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 895 | 145.40 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 908 | 145.42 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 965 | 145.48 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 969 | 145.49 | humidity | 80.0 | 720 | > th | dose dependent | no | NA | NA |
| 973 | 145.50 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 12 |
| 980 | 145.50 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 1000 | 145.54 | humidity | 90.0 | 720 | < th | dose independent | sin | 3 | NA |