BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0650900 Os02g0650900|AK103028
(411 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0650900 Similar to Glutamate dehydrogenase 2 (EC 1.4.1... 850 0.0
Os03g0794500 Similar to Glutamate dehydrogenase (EC 1.4.1.3... 689 0.0
Os04g0543900 Similar to Glutamate dehydrogenase (EC 1.4.1.3... 348 6e-96
AK107677 145 5e-35
AK109045 144 1e-34
Os01g0558200 Glu/Leu/Phe/Val dehydrogenase family protein 143 3e-34
Os07g0238700 Similar to Glutamate dehydrogenase (EC 1.4.1.3... 81 1e-15
>Os02g0650900 Similar to Glutamate dehydrogenase 2 (EC 1.4.1.3) (GDH 2)
Length = 411
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/411 (100%), Positives = 411/411 (100%)
Query: 1 MNALAATSRNFRQAARLLGLDSKLQKSLLIPLREIKVECTIPKDDGTLATFVGFRVQHDN 60
MNALAATSRNFRQAARLLGLDSKLQKSLLIPLREIKVECTIPKDDGTLATFVGFRVQHDN
Sbjct: 1 MNALAATSRNFRQAARLLGLDSKLQKSLLIPLREIKVECTIPKDDGTLATFVGFRVQHDN 60
Query: 61 SRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAVPYGGAKGGIGCTPGELSRSELERL 120
SRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAVPYGGAKGGIGCTPGELSRSELERL
Sbjct: 61 SRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAVPYGGAKGGIGCTPGELSRSELERL 120
Query: 121 TRVFTQKIHDLIGINTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180
TRVFTQKIHDLIGINTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGINTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180
Query: 181 RDAATGRGVMYATEALLTEYSESISGSTFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTG 240
RDAATGRGVMYATEALLTEYSESISGSTFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTG
Sbjct: 181 RDAATGRGVMYATEALLTEYSESISGSTFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTG 240
Query: 241 AIRNKSGIDIPALLKHRSEGGSLEDFYGAEVMDAAELLVHECDVLVPCALGGVLNRENAA 300
AIRNKSGIDIPALLKHRSEGGSLEDFYGAEVMDAAELLVHECDVLVPCALGGVLNRENAA
Sbjct: 241 AIRNKSGIDIPALLKHRSEGGSLEDFYGAEVMDAAELLVHECDVLVPCALGGVLNRENAA 300
Query: 301 EVKARFIIEGANHPTDTEADEILAKKGVIVLPDIYANSGGVVVSYFEWVQNIQGFMWDEE 360
EVKARFIIEGANHPTDTEADEILAKKGVIVLPDIYANSGGVVVSYFEWVQNIQGFMWDEE
Sbjct: 301 EVKARFIIEGANHPTDTEADEILAKKGVIVLPDIYANSGGVVVSYFEWVQNIQGFMWDEE 360
Query: 361 KVNRELQKYMKNAFQNIKDMCKSQNCNLRMGAFTLGVNRVAKATLLRGWEA 411
KVNRELQKYMKNAFQNIKDMCKSQNCNLRMGAFTLGVNRVAKATLLRGWEA
Sbjct: 361 KVNRELQKYMKNAFQNIKDMCKSQNCNLRMGAFTLGVNRVAKATLLRGWEA 411
>Os03g0794500 Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH)
Length = 411
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/411 (77%), Positives = 370/411 (90%)
Query: 1 MNALAATSRNFRQAARLLGLDSKLQKSLLIPLREIKVECTIPKDDGTLATFVGFRVQHDN 60
MNALAATSRNF+QAA+LLGLDSKL+KSLLIP REIKVECTIPKDDGTLA++VGFRVQHDN
Sbjct: 1 MNALAATSRNFKQAAKLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDN 60
Query: 61 SRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAVPYGGAKGGIGCTPGELSRSELERL 120
+RGPMKGGIRYH EVDPDEVNALAQLMTWKTAVA +PYGGAKGGIGC+PG+LS SELERL
Sbjct: 61 ARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPGDLSISELERL 120
Query: 121 TRVFTQKIHDLIGINTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180
TRVFTQKIHDLIGI+TDVPAPDMGTN+QTMAWILDEYSKFHG+SPAVVTGKP+DLGGSLG
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNSQTMAWILDEYSKFHGYSPAVVTGKPVDLGGSLG 180
Query: 181 RDAATGRGVMYATEALLTEYSESISGSTFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTG 240
RDAATGRGV++ATEALL E+ + I+G FVIQG GNVGSWAA+LI + GGK++A+ DVTG
Sbjct: 181 RDAATGRGVLFATEALLAEHGKGIAGQRFVIQGFGNVGSWAAQLISEAGGKVIAISDVTG 240
Query: 241 AIRNKSGIDIPALLKHRSEGGSLEDFYGAEVMDAAELLVHECDVLVPCALGGVLNRENAA 300
A++N +G+DI L+KH SE ++ F G + +D LL ECDVL+P ALGGV+N++NA
Sbjct: 241 AVKNSNGLDIAKLMKHSSENRGIKGFDGGDAIDPRSLLTEECDVLIPAALGGVINKDNAN 300
Query: 301 EVKARFIIEGANHPTDTEADEILAKKGVIVLPDIYANSGGVVVSYFEWVQNIQGFMWDEE 360
E+KA++IIE ANHPTD EADEIL+KKGV++LPDI ANSGGV VSYFEWVQNIQGFMWDEE
Sbjct: 301 EIKAKYIIEAANHPTDPEADEILSKKGVLILPDILANSGGVTVSYFEWVQNIQGFMWDEE 360
Query: 361 KVNRELQKYMKNAFQNIKDMCKSQNCNLRMGAFTLGVNRVAKATLLRGWEA 411
KVN EL+ YM F+++K+MC+S +C+LRMGAFTLGVNRVA+AT+LRGWEA
Sbjct: 361 KVNNELKTYMTRGFRDVKEMCRSHHCDLRMGAFTLGVNRVARATVLRGWEA 411
>Os04g0543900 Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH)
Length = 178
Score = 348 bits (892), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 163/175 (93%), Positives = 170/175 (97%)
Query: 1 MNALAATSRNFRQAARLLGLDSKLQKSLLIPLREIKVECTIPKDDGTLATFVGFRVQHDN 60
MNALAATSRNFRQAARLLGLDSKL+KSLLIP REIKVECTIPKDDGTLA+F+GFRVQHDN
Sbjct: 1 MNALAATSRNFRQAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFIGFRVQHDN 60
Query: 61 SRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAVPYGGAKGGIGCTPGELSRSELERL 120
+RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAA+PYGGAKGGIGC PGELS SELERL
Sbjct: 61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCAPGELSTSELERL 120
Query: 121 TRVFTQKIHDLIGINTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDL 175
TRVFTQKIHDLIG +TDVPAPDMGTN+QTMAWILDEYSKFHGHSPAVVTGKPI L
Sbjct: 121 TRVFTQKIHDLIGAHTDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVL 175
>AK107677
Length = 451
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 190/408 (46%), Gaps = 29/408 (7%)
Query: 30 IPLREIKVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALAQLMTW 89
+P R I+ D G G+RVQ +++ GP KGG+R HP V+ + L +
Sbjct: 38 VPERVIQFRVVWEDDSGKCQVNKGYRVQFNSALGPYKGGLRLHPTVNLSILKFLGFEQIF 97
Query: 90 KTAVAAVPYGGAKGGIGCTPGELSRSELERLTRVFTQKIHDLIGINTDVPAPDMGTNAQT 149
K A+ + GG KGG P S +E+ + F ++ IG +TDVPA D+ +
Sbjct: 98 KNALTGLNMGGGKGGADFDPKGKSDNEIRKFCVAFMTELSKHIGADTDVPAGDINVGGRE 157
Query: 150 MAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVMYATEALLTEYS---ESISG 206
+ ++ +Y + V+TGK ++ GGSL R ATG G++Y + ++ S ES G
Sbjct: 158 IGYMFGQYRRLRNQWEGVLTGKGLNWGGSLIRPEATGYGLVYYVDHMINYASGGKESFKG 217
Query: 207 STFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTGAIRNKSG-------IDIPALLKHRSE 259
I G GNV +AA + + GG +V++ D G++ G I A LK + +
Sbjct: 218 KKVAISGSGNVAQYAALKVIELGGTVVSLSDSKGSLIATEGKGFTPEDISQIAALKLKRQ 277
Query: 260 GGSLEDFYGAEVMDAAELLVH--ECDVLVPCALGGVLNRENAAEVKA---RFIIEGANHP 314
+ + + ++ A H DV +P A ++++ A + A +FI EG+N
Sbjct: 278 ALTALEGHSYNYIEGARPWKHVGNVDVALPSATQNEVSQDEAEALIAAGCKFIAEGSNMG 337
Query: 315 TDTEADEIL-----AKKG--VIVLPDIYANSGGVVVSYFEWVQNIQGFMWDEEKVNRELQ 367
EA + + KG + P AN+GGV VS E QN Q W E+V+ +L
Sbjct: 338 CTQEAIDAFENHRKSNKGSSIWYAPGKAANAGGVAVSGLEMAQNSQRLSWTNEEVDAKLA 397
Query: 368 KYMKNAFQNIKDMCKS-------QNCNLRMGAFTLGVNRVAKATLLRG 408
K MK+ F+N K + +L GA G +VA A +G
Sbjct: 398 KIMKDCFENCLATAKEYITPAEGEFPSLVAGANVAGFKKVAAAMHDQG 445
>AK109045
Length = 403
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/361 (32%), Positives = 174/361 (48%), Gaps = 22/361 (6%)
Query: 44 DDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAVPYGGAKG 103
D G G+RVQ +++ GP KGG+R+HP V+ + L +K A+ + GG KG
Sbjct: 7 DKGECQVQKGYRVQFNSALGPYKGGLRFHPTVNLSILKFLGFEQIFKNALTGLNMGGGKG 66
Query: 104 GIGCTPGELSRSELERLTRVFTQKIHDLIGINTDVPAPDMGTNAQTMAWILDEYSKFHGH 163
G P S +E+ + F ++++ IG +TDVPA D+G + + ++ Y
Sbjct: 67 GCDFDPKGKSDNEIRKFCVAFMRELNKHIGADTDVPAGDIGVGGREIGYLFGAYRAERNR 126
Query: 164 SPAVVTGKPIDLGGSLGRDAATGRGVMYATEALLTEYS---ESISGSTFVIQGLGNVGSW 220
V+TGK GGSL R ATG G++Y E ++ S ES +G I G GNV +
Sbjct: 127 WEGVLTGKGGSWGGSLIRPEATGYGLVYYVEHMINYASGGKESFAGKRVAISGSGNVAQY 186
Query: 221 AAKLIHQKGGKIVAVGDVTGAI--RNKSGI------DIPALLKHRSEGGSLEDFYGAEVM 272
AA I + GG ++++ D GA+ + G +I AL R +LE+ V
Sbjct: 187 AALKIIELGGTVISLSDSKGALIADDDKGFTPEVINEIAALKLQRKALTALENHSFRYVE 246
Query: 273 DAAELL-VHECDVLVPCALGGVLNRENAA---EVKARFIIEGANHPTDTEADEIL----- 323
A V + DV +P A ++ + A E A+FI EG+N EA E+
Sbjct: 247 GARPWKEVKKVDVALPSATQNEVSEDEAKALIESGAKFIAEGSNMGCTQEAIEVFEAHRR 306
Query: 324 AKKGVIVL--PDIYANSGGVVVSYFEWVQNIQGFMWDEEKVNRELQKYMKNAFQNIKDMC 381
KG + P AN+GGV VS E QN Q W E+V+ +L+ MK+ F+N
Sbjct: 307 ENKGSAIWYAPGKAANAGGVAVSGLEMAQNSQRLSWSAEEVDEKLKGIMKDCFENCLSTA 366
Query: 382 K 382
K
Sbjct: 367 K 367
>Os01g0558200 Glu/Leu/Phe/Val dehydrogenase family protein
Length = 640
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 156/362 (43%), Gaps = 10/362 (2%)
Query: 23 KLQKSLLIPLREIKVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNA 82
++ + LL P R D G GFRVQ + GP +GG+R+HP +
Sbjct: 237 QILERLLEPERCFIFRVPWVDDRGEAHVNRGFRVQFSQALGPCRGGLRFHPSMTLSVAKF 296
Query: 83 LAQLMTWKTAVAAVPYGGAKGGIGCTPGELSRSELERLTRVFTQKIHDLIGINTDVPAPD 142
LA T K A++ GGA GG P S SE+ R + F +++ +G + D PA D
Sbjct: 297 LAFEQTLKNALSQYKLGGAAGGSDFDPKGKSESEIMRFCQSFMDELYRYLGPDQDFPAED 356
Query: 143 MGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVMYATEALLTEYSE 202
+G + M ++ +Y + GH TG I GS R ATG G+++ +L + ++
Sbjct: 357 VGVGPREMGYLFGQYRRLSGHFQGNFTGPKIFWSGSSFRTEATGYGLVFFARVVLADMNK 416
Query: 203 SISGSTFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTGAIRNKSGIDIPAL-------LK 255
+ G VI G G + + + V V D G + + G D +
Sbjct: 417 ELKGLRCVISGSGKIAMHVLEKLLSCEAIPVTVSDSKGYLLDTEGFDYMKYSVLRNIKAQ 476
Query: 256 HRSEGGSLEDFYGAEVMDAAELLVHECDVLVPCALGGVLNRENAAEV---KARFIIEGAN 312
RS L+ + A+ +D A+ +CDV PCA +++ A + R +IE +N
Sbjct: 477 QRSLKEYLKSYPNAKYIDDAKPWSEKCDVAFPCASQNEIDQAEALAIINSGCRVLIECSN 536
Query: 313 HPTDTEADEILAKKGVIVLPDIYANSGGVVVSYFEWVQNIQGFMWDEEKVNRELQKYMKN 372
P +A +IL V+V P +GGV V E W E ++Q +K
Sbjct: 537 MPCTAQAVDILRTAKVVVAPAKATAAGGVAVGELELNPEFSLMQWSVEDFENKIQDAVKQ 596
Query: 373 AF 374
+
Sbjct: 597 TY 598
>Os07g0238700 Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH)
Length = 182
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 44/47 (93%)
Query: 6 ATSRNFRQAARLLGLDSKLQKSLLIPLREIKVECTIPKDDGTLATFV 52
+RNF+QAA+LLGLDSKL+K+LLIP REIKVECT+PKDDGTLA+++
Sbjct: 123 CVARNFKQAAKLLGLDSKLEKNLLIPFREIKVECTVPKDDGTLASYM 169
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,301,919
Number of extensions: 635561
Number of successful extensions: 1560
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1553
Number of HSP's successfully gapped: 7
Length of query: 411
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 308
Effective length of database: 11,657,759
Effective search space: 3590589772
Effective search space used: 3590589772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)