Os03g0794500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH).
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Os03g0794500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.11 | 0.602 | 12.7 | -3.24 | 0.949 | 1.63 | -0.173 | -4.85 | -0.884 | 23.4 | 25.76 | 2742 | -- | -- |
| 164.76 | 0.598 | 12.6 | -2 | 1.01 | 1.18 | -0.157 | -- | -0.964 | 23.3 | 25.07 | 8371 | -- | -- |
| 164.23 | 0.597 | 12.7 | -3.23 | 0.947 | 1.63 | -- | -4.82 | -0.888 | 23.4 | 25.7 | 2740 | -- | -- |
| 164.97 | 0.598 | 12.6 | -2.02 | 1.01 | 1.19 | -- | -- | -0.964 | 23.4 | 25.3 | 8310 | -- | -- |
| 212.53 | 0.679 | 12.7 | -3.57 | -- | 2.05 | -- | -5.9 | -1.1 | -- | 24.59 | 2422 | -- | -- |
| 221.97 | 0.698 | 12.5 | -1.56 | 1.12 | -- | -0.15 | -- | -0.54 | 23.6 | -- | -- | -- | -- |
| 222.07 | 0.698 | 12.5 | -1.55 | 1.12 | -- | -- | -- | -0.54 | 23.6 | -- | -- | -- | -- |
| 227.94 | 0.703 | 12.6 | -2.06 | -- | 1.37 | -- | -- | -0.992 | -- | 25.37 | 8142 | -- | -- |
| 258.09 | 0.748 | 12.5 | -- | 1.08 | 0.798 | -- | -- | -0.53 | 23.6 | 28.2 | 7752 | -- | -- |
| 300.76 | 0.81 | 12.5 | -1.52 | -- | -- | -- | -- | -0.527 | -- | -- | -- | -- | -- |
| 285.42 | 0.79 | 12.5 | -- | 1.1 | -- | -- | -- | -0.367 | 23.5 | -- | -- | -- | -- |
| 323.86 | 0.838 | 12.5 | -- | -- | 0.904 | -- | -- | -0.605 | -- | 28.01 | 8171 | -- | -- |
| 361.66 | 0.888 | 12.4 | -- | -- | -- | -- | -- | -0.359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 2 | 151.54 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 152.35 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 4 | 152.48 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 5 | 152.63 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 8 | 153.04 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 14 | 153.29 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 16 | 153.33 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 22 | 153.62 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 23 | 153.67 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 8 |
| 30 | 153.90 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 33 | 154.01 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 34 | 154.05 | wind | 1.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 35 | 154.06 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 37 | 154.09 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 39 | 154.12 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 42 | 154.14 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 76 | 154.62 | wind | 9.0 | 43200 | < th | dose dependent | sin | 3 | NA |
| 91 | 154.89 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 113 | 155.15 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 128 | 155.38 | wind | 3.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 146 | 155.60 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 5 |
| 150 | 155.61 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 163 | 155.72 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 167 | 155.79 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 173 | 155.88 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 206 | 156.18 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 212 | 156.21 | wind | 3.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 215 | 156.22 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 236 | 156.49 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 243 | 156.55 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 270 | 156.74 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 278 | 156.83 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 290 | 156.93 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 303 | 157.07 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 312 | 157.16 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 313 | 157.18 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 352 | 157.43 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 359 | 157.50 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 369 | 157.60 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 408 | 157.91 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 415 | 157.95 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 418 | 157.96 | wind | 3.0 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 434 | 158.07 | wind | 3.0 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 443 | 158.14 | wind | 3.0 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 454 | 158.24 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 459 | 158.26 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 493 | 158.49 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 511 | 158.61 | wind | 3.0 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 544 | 158.77 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 594 | 159.00 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 2 | 20 |
| 599 | 159.04 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 615 | 159.13 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 658 | 159.32 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 662 | 159.33 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 672 | 159.40 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 677 | 159.42 | wind | 5.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 687 | 159.45 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 711 | 159.53 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 718 | 159.57 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 720 | 159.57 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 730 | 159.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 733 | 159.66 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 738 | 159.67 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 743 | 159.70 | wind | 9.0 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 749 | 159.73 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 789 | 159.91 | wind | 9.0 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 790 | 159.91 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 794 | 159.95 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 821 | 160.03 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 830 | 160.08 | wind | 5.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 833 | 160.09 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 838 | 160.11 | wind | 9.0 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 872 | 160.25 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 902 | 160.38 | wind | 3.0 | 43200 | > th | dose dependent | no | NA | NA |
| 907 | 160.41 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 984 | 160.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 992 | 160.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 993 | 160.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 10 |