BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0794300 Os03g0794300|Os03g0794300
(177 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0794300 GCN5-related N-acetyltransferase domain contai... 306 5e-84
Os03g0794200 GCN5-related N-acetyltransferase domain contai... 233 5e-62
Os03g0794400 GCN5-related N-acetyltransferase domain contai... 154 3e-38
Os03g0664800 GCN5-related N-acetyltransferase domain contai... 141 2e-34
Os03g0665000 GCN5-related N-acetyltransferase domain contai... 130 7e-31
Os01g0358866 65 2e-11
Os04g0259100 64 4e-11
>Os03g0794300 GCN5-related N-acetyltransferase domain containing protein
Length = 177
Score = 306 bits (784), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 155/177 (87%), Positives = 155/177 (87%)
Query: 1 MEVTLRRFELSDVDAMMAWASDPAVAAFCRWEPYQSTEPLLAYLRDTVLPHPWFRAICLA 60
MEVTLRRFELSDVDAMMAWASDPAVAAFCRWEPYQSTEPLLAYLRDTVLPHPWFRAICLA
Sbjct: 1 MEVTLRRFELSDVDAMMAWASDPAVAAFCRWEPYQSTEPLLAYLRDTVLPHPWFRAICLA 60
Query: 61 TXXXXXXXXXRPVGAVSLAPTADACRGELGYVVARAHWGKGXXXXXXXXXXXXXLGGEVS 120
T RPVGAVSLAPTADACRGELGYVVARAHWGKG LGGEVS
Sbjct: 61 TGAGAGDGDGRPVGAVSLAPTADACRGELGYVVARAHWGKGVATAAVRRAVAAVLGGEVS 120
Query: 121 GLARVEALVDVDNRASQRVVEKAGFRREGVLRRHYWHKGRVRDLVMYSFVSSDQLAE 177
GLARVEALVDVDNRASQRVVEKAGFRREGVLRRHYWHKGRVRDLVMYSFVSSDQLAE
Sbjct: 121 GLARVEALVDVDNRASQRVVEKAGFRREGVLRRHYWHKGRVRDLVMYSFVSSDQLAE 177
>Os03g0794200 GCN5-related N-acetyltransferase domain containing protein
Length = 193
Score = 233 bits (594), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 121/176 (68%), Positives = 135/176 (76%), Gaps = 2/176 (1%)
Query: 1 MEVTLRRFELSDVDAMMAWASDPAVAAFCRWEPYQSTEPLLAYLRDTVLPHPWFRAICLA 60
+EV+LRRF+L+DVDAMM WASDP VAA CRWEPY+STEPLLAYLRDTVLPHPWFRAIC+A
Sbjct: 17 VEVSLRRFDLADVDAMMVWASDPQVAAVCRWEPYESTEPLLAYLRDTVLPHPWFRAICVA 76
Query: 61 TX-XXXXXXXXRPVGAVSLAPTADACRGELGYVVARAHWGKGXXXXXXXXXXXXXLGGEV 119
RPVGAVS++PTADACR ELGYVVARAHWGKG GEV
Sbjct: 77 AAFDGDGGGEDRPVGAVSVSPTADACRAELGYVVARAHWGKGVATAAVKRVVAAVF-GEV 135
Query: 120 SGLARVEALVDVDNRASQRVVEKAGFRREGVLRRHYWHKGRVRDLVMYSFVSSDQL 175
GL RVEALVDV N ASQRV+EKAGFRRE VLR + KG VRD+V+YSF+S+D L
Sbjct: 136 EGLERVEALVDVRNAASQRVLEKAGFRREAVLRSYCVLKGEVRDMVIYSFISTDPL 191
>Os03g0794400 GCN5-related N-acetyltransferase domain containing protein
Length = 169
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 120/175 (68%), Gaps = 9/175 (5%)
Query: 3 VTLRRFELSDVDAMMAWASDPAVAAFCRWEPYQSTEPLLAYLRDTVLPHPWFRAICLATX 62
VTLRRFEL+D DAMMAWASDP V AF WEPY+S + L A++RDTVLPHPWFRAICLA
Sbjct: 4 VTLRRFELADADAMMAWASDPEVTAFMTWEPYESVDSLRAFIRDTVLPHPWFRAICLAGD 63
Query: 63 XXXXXXXXRPVGAVSLAPTADACRGELGYVVARAHWGKGXXXXXXXXXXXXXLGGEVSGL 122
GAVS+ PTAD CR E+ VARAHWGKG ++ G+
Sbjct: 64 GDG--------GAVSVTPTADRCRAEVAVAVARAHWGKGVATAALRRALAAAF-ADLDGV 114
Query: 123 ARVEALVDVDNRASQRVVEKAGFRREGVLRRHYWHKGRVRDLVMYSFVSSDQLAE 177
RVEALVDV N AS+R +EKAGF++E VLR + KG++RD+V+YSF+S+D L E
Sbjct: 115 ERVEALVDVGNAASRRALEKAGFQQEAVLRSYCVVKGQLRDMVIYSFISTDPLVE 169
>Os03g0664800 GCN5-related N-acetyltransferase domain containing protein
Length = 203
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 105/187 (56%), Gaps = 24/187 (12%)
Query: 3 VTLRRFELSDVDAMMAWASDPAVAAFCRWEPYQSTEPLLAYLRDTVLPHPWFRAICLATX 62
VTLR F +D +A+ AWASDP V F R + Y + Y+ D VLPHPW+RAIC+A
Sbjct: 10 VTLREFTEADAEALFAWASDPRVVRFQRRDAYSHVDEARRYIVDKVLPHPWYRAICVAG- 68
Query: 63 XXXXXXXXRPVGAVSLAPTAD----------------ACRGELGYVVARAHWGKGXXXXX 106
RPVG++S+ P D CR +GY VA AHWG+G
Sbjct: 69 ------ADRPVGSISVKPADDLPLPEPESETGRLRSGCCRASVGYRVAHAHWGRGVATRA 122
Query: 107 XXXXXXXXLGGEVSGLARVEALVDVDNRASQRVVEKAGFRREGVLRRHYWHKGRVRDLVM 166
L E L R+EA+ DV+N ASQRV+EKAGF REGVLRR+ KGR RD+VM
Sbjct: 123 VRAVAEAVL-AEWPWLERLEAVADVENPASQRVLEKAGFAREGVLRRYVVLKGRPRDMVM 181
Query: 167 YSFVSSD 173
+S V +D
Sbjct: 182 FSRVRAD 188
>Os03g0665000 GCN5-related N-acetyltransferase domain containing protein
Length = 214
Score = 130 bits (326), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 3 VTLRRFELSDVDAMMAWASDPAVAAFCRWEPYQSTEPLLAYLRDTVLPHPWFRAICLATX 62
VTLR L+D D MAWASD V F R + E +A +RDTVL HPWFRAIC+
Sbjct: 21 VTLRPLGLADADDFMAWASDERVMRFLRRPLCAAREQAVAQIRDTVLGHPWFRAICV--D 78
Query: 63 XXXXXXXXRPVGAVSLAPTAD--ACRGELGYVVARAHWGKGXXXXXXXXXXXXXLGGEVS 120
RPVG VS+ P AD R LGY ++ WG+G E+
Sbjct: 79 DDDAGAGRRPVGQVSVWPYADEGGHRANLGYALSHGLWGRGIATAAITMVVARVF-DELP 137
Query: 121 GLARVEALVDVDNRASQRVVEKAGFRREGVLRRHYWHK-GRVRDLVMYSFVSSDQ 174
GL R+EA+ DV+N SQR +EKAGFR+EGVLRR+ + G V D V+YSF++SD+
Sbjct: 138 GLERLEAVTDVENVRSQRALEKAGFRKEGVLRRYIVRRSGEVMDAVIYSFLASDR 192
>Os01g0358866
Length = 142
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 42/52 (80%)
Query: 126 EALVDVDNRASQRVVEKAGFRREGVLRRHYWHKGRVRDLVMYSFVSSDQLAE 177
EALVDVDN AS+R +EKAGF++E VL + KG++RD+V+YSF+S+D L E
Sbjct: 91 EALVDVDNAASRRALEKAGFQQEAVLCNYCVVKGQLRDMVIYSFISTDPLVE 142
>Os04g0259100
Length = 333
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 54/118 (45%), Gaps = 23/118 (19%)
Query: 43 YLRDTVLPHPWFRAICLATXXXXXXXXXRPVGAVSLAPTAD---------------ACRG 87
Y+ D VLPHPW+RAIC+A RPVG++S+ P D CR
Sbjct: 203 YIVDKVLPHPWYRAICVAG-------ADRPVGSISVNPADDLREPDESETGGLRSRCCRA 255
Query: 88 ELGYVVARAHWGKGXXXXXXXXXXXXXLGGEVSGLARVEALVDVDNRASQRVVEKAGF 145
+GY VA HWG+G + E L R+ A+ DV+N A +R K F
Sbjct: 256 SVGYRVAHVHWGRG-VVTRAVRATAEVVSAEWPWLERLAAVADVENPAGRRAAAKRYF 312
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,209,394
Number of extensions: 177211
Number of successful extensions: 405
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 7
Length of query: 177
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 83
Effective length of database: 12,127,685
Effective search space: 1006597855
Effective search space used: 1006597855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)