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Os03g0664800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GCN5-related N-acetyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0571) R2 : 0.484
β1 : 3.02 (0.215) R2dD : 0.26 R2D : 0.154
β2 : 1.69 (0.136) R2dC : 0.166 R2C : 0.19
β3 : 3.46 (0.352) R2dE : 0.113 R2E : 0.0453
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.587 (0.123) R2dN8 : 0.0429 R2N8 : -0.00741
σ : 1.06
deviance : 520.96
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C
peak time of C : 22.8
E
wheather : radiation
threshold : 4.571
memory length : 1178
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10.6
open length of G : 2.02

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
508.76 1.06 11 6.19 1.7 48.4 -0.336 136 0.677 22.9 1.514 1242 11.2 0.65
617.6 1.17 10 2.61 1.77 3.21 -0.752 -- 0.529 23 2.464 181 11.4 1.63
508.55 1.05 11 6.16 1.7 48.6 -- 137 0.677 22.9 1.787 1230 11.2 0.633
520.96 1.06 10 3.02 1.69 3.46 -- -- 0.587 22.8 4.571 1178 10.6 2.02
686.38 1.22 10.9 6.2 -- 48.8 -- 137 0.697 -- 1.844 1211 11.2 0.653
627.71 1.17 10 2.57 1.75 -- -0.644 -- 0.516 23 -- -- -- --
629.46 1.17 10 2.6 1.76 -- -- -- 0.518 22.9 -- -- -- --
680.9 1.22 10 3.08 -- 3.76 -- -- 0.691 -- 4.345 1159 10.7 2.23
775.71 1.3 10 -- 1.84 2.96 -- -- 0.612 22.9 4.449 1172 10.7 1.99
820.99 1.34 9.98 2.64 -- -- -- -- 0.531 -- -- -- -- --
807.32 1.33 10.1 -- 1.78 -- -- -- 0.229 23 -- -- -- --
778.28 1.3 9.95 -- -- 2.11 -- -- 0.532 -- 65.21 888 12.9 5.17
1004.31 1.48 10 -- -- -- -- -- 0.239 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 517.50 radiation 1 1440 > th dose independent rect. 9 4
2 517.77 radiation 1 1440 < th dose independent rect. 11 1
3 517.77 radiation 1 1440 < th dose dependent rect. 11 1
6 517.88 wind 1 4320 < th dose dependent rect. 6 1
7 518.78 radiation 1 1440 > th dose independent rect. 11 1
11 521.67 radiation 10 1440 < th dose dependent rect. 11 7
14 521.96 radiation 10 1440 < th dose dependent rect. 11 11
17 522.03 radiation 10 1440 < th dose dependent rect. 11 13
18 522.04 radiation 10 1440 < th dose dependent rect. 11 17
38 523.35 wind 1 4320 < th dose independent rect. 6 1
74 526.03 radiation 10 1440 < th dose dependent sin 18 NA
101 527.88 radiation 20 1440 < th dose dependent rect. 11 1
106 528.74 radiation 1 1440 < th dose independent rect. 13 1
107 528.74 radiation 1 1440 < th dose dependent rect. 13 1
109 528.83 wind 1 4320 > th dose independent rect. 6 1
110 528.85 radiation 1 1440 > th dose independent rect. 9 1
147 533.31 wind 1 14400 > th dose independent rect. 24 2
155 533.92 wind 1 14400 < th dose independent rect. 24 2
166 534.89 wind 7 43200 > th dose dependent rect. 16 1
167 534.89 atmosphere 995 43200 < th dose dependent rect. 12 20
179 535.39 humidity 70 1440 < th dose dependent rect. 15 1
180 535.43 temperature 20 1440 < th dose independent rect. 22 5
183 535.62 temperature 20 1440 < th dose independent rect. 23 2
195 536.40 atmosphere 995 43200 < th dose dependent rect. 12 16
197 536.53 atmosphere 995 43200 > th dose independent rect. 18 19
199 536.58 humidity 60 1440 > th dose independent rect. 15 1
200 536.61 temperature 20 1440 > th dose independent rect. 22 5
206 536.90 temperature 20 1440 > th dose independent rect. 23 2
211 537.05 atmosphere 995 43200 > th dose independent sin 6 NA
234 537.88 wind 9 14400 > th dose independent rect. 23 2
236 537.98 atmosphere 995 43200 < th dose independent sin 7 NA
239 538.02 wind 9 14400 > th dose dependent rect. 23 2
240 538.03 atmosphere 995 43200 < th dose independent rect. 18 19
243 538.11 temperature 20 1440 > th dose independent rect. 6 1
244 538.12 wind 7 43200 > th dose dependent rect. 16 3
252 538.35 humidity 90 1440 < th dose dependent rect. 15 1
254 538.39 atmosphere 995 43200 > th dose independent rect. 21 16
262 538.75 atmosphere 995 43200 < th dose dependent sin 16 NA
263 538.77 humidity 90 14400 > th dose dependent rect. 12 3
264 538.86 atmosphere 995 43200 < th dose independent rect. 21 18
291 539.16 humidity 90 14400 > th dose dependent rect. 12 1
322 540.71 atmosphere 995 43200 < th dose independent rect. 21 16
332 540.93 humidity 50 14400 > th dose dependent rect. 2 6
334 541.01 humidity 50 1440 > th dose dependent rect. 15 1
335 541.06 wind 7 43200 > th dose independent rect. 17 2
337 541.09 temperature 20 1440 < th dose independent rect. 22 10
341 541.15 atmosphere 995 43200 < th dose independent rect. 22 14
345 541.23 humidity 60 1440 < th dose independent rect. 15 1
368 541.51 humidity 50 14400 > th dose dependent rect. 5 2
369 541.52 atmosphere 995 43200 > th dose independent rect. 24 11
372 541.59 atmosphere 995 43200 < th dose independent rect. 24 11
374 541.68 atmosphere 995 43200 > th dose independent rect. 5 3
376 541.72 atmosphere 995 43200 < th dose dependent sin 10 NA
386 541.89 humidity 90 14400 < th dose independent rect. 6 1
387 541.92 atmosphere 995 43200 < th dose independent rect. 3 6
395 542.05 atmosphere 995 43200 < th dose dependent rect. 1 8
397 542.09 atmosphere 995 43200 > th dose independent rect. 2 8
398 542.09 temperature 20 1440 > th dose independent rect. 22 10
400 542.17 atmosphere 995 43200 < th dose independent rect. 1 9
407 542.33 atmosphere 995 43200 > th dose independent rect. 3 6
426 542.84 radiation 10 1440 < th dose independent rect. 14 4
427 542.85 wind 9 43200 < th dose independent rect. 16 4
432 543.08 temperature 20 1440 < th dose independent rect. 6 1
443 543.26 wind 7 43200 < th dose independent rect. 17 2
454 543.43 atmosphere 995 43200 < th dose dependent rect. 4 4
466 543.66 humidity 90 1440 < th dose dependent rect. 12 4
468 543.68 wind 9 43200 > th dose independent rect. 16 4
502 544.32 wind 9 14400 < th dose independent rect. 23 1
508 544.52 humidity 90 14400 > th dose independent rect. 6 1
559 545.06 radiation 40 14400 > th dose independent rect. 7 1
575 545.06 radiation 40 14400 > th dose dependent rect. 7 1
600 545.26 radiation 10 1440 < th dose independent rect. 12 10
604 545.30 radiation 10 1440 < th dose independent rect. 12 12
605 545.31 radiation 10 1440 > th dose independent rect. 11 7
618 545.32 radiation 10 1440 < th dose independent rect. 12 16
620 545.34 radiation 10 1440 < th dose independent rect. 14 8
628 545.40 radiation 10 1440 < th dose independent rect. 14 14
630 545.41 radiation 10 1440 < th dose independent rect. 14 10
680 545.90 humidity 80 1440 > th dose independent rect. 12 2
689 546.18 atmosphere 995 43200 < th dose independent rect. 5 3
699 546.35 humidity 50 1440 > th dose dependent rect. 12 4
745 547.10 wind 7 43200 > th dose dependent rect. 18 2
814 548.24 humidity 90 14400 > th dose dependent rect. 4 12
830 548.46 humidity 80 1440 < th dose independent rect. 12 2
890 549.06 wind 3 14400 < th dose dependent rect. 1 1
894 549.08 humidity 60 1440 > th dose dependent rect. 12 1
934 549.51 radiation 10 1440 < th dose independent sin 16 NA
958 549.86 temperature 20 1440 > th dose independent sin 9 NA
960 549.88 temperature 20 1440 < th dose independent sin 9 NA