BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0664800 Os03g0664800|J100023K20
         (203 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32020.1  | chr2:13631193-13631744 REVERSE LENGTH=184          140   5e-34
AT2G32030.1  | chr2:13632675-13633241 REVERSE LENGTH=189          138   2e-33
AT3G22560.1  | chr3:7998915-7999442 REVERSE LENGTH=176            134   2e-32

>AT2G32020.1 | chr2:13631193-13631744 REVERSE LENGTH=184
          Length = 183

 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 100/179 (55%), Gaps = 18/179 (10%)

Query: 10  VTLREFTEADAEALFAWASDPRVVRFQRRDAYSHVDEARRYIVDKVLPHPWYRAICVAGA 69
           ++LR  T +D +    WA+DP+V RF   +  +  DEA +YI D+VL HPW RAIC+   
Sbjct: 20  ISLRPMTLSDVDDYMVWATDPKVARFCTWEPCTSRDEAIKYITDRVLTHPWLRAICLED- 78

Query: 70  DRPVGSISVKPADDLPLPEPESETGRLRSGCCRASVGYRVAHAHWGRGXXXXXXXXXXXX 129
           DRP+G I +   D++                 R  +GY +A  +WG+G            
Sbjct: 79  DRPIGYILIMAVDNI-----------------RKEIGYVLARKYWGKGFATEAVRLVTAE 121

Query: 130 XXXXWPWLERLEAVADVENPASQRVLEKAGFAREGVLRRYVVLKGRPRDMVMFSRVRAD 188
               +P +ERLEA+ DV+N  SQRVLEK GF REGV+R+++ +KG  RD VMFS +  D
Sbjct: 122 VFEEFPEIERLEALVDVDNVGSQRVLEKVGFTREGVMRKFICIKGSVRDTVMFSFLSTD 180



>AT2G32030.1 | chr2:13632675-13633241 REVERSE LENGTH=189
          Length = 188

 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 18/180 (10%)

Query: 9   EVTLREFTEADAEALFAWASDPRVVRFQRRDAYSHVDEARRYIVDKVLPHPWYRAICVAG 68
           ++ LR  T +D +    WA+D  V RF   + Y+  + A  Y+ D +LPHPW RAIC+  
Sbjct: 24  KIHLRPMTLSDVDDFMVWATDSNVTRFCTWEPYTSREAAIAYLNDALLPHPWLRAICLDN 83

Query: 69  ADRPVGSISVKPADDLPLPEPESETGRLRSGCCRASVGYRVAHAHWGRGXXXXXXXXXXX 128
            DRP+GSISV P D++                 R  +GY +   +WG+G           
Sbjct: 84  -DRPIGSISVTPVDEI-----------------RGEIGYVLGSKYWGKGIATEAVRLVAG 125

Query: 129 XXXXXWPWLERLEAVADVENPASQRVLEKAGFAREGVLRRYVVLKGRPRDMVMFSRVRAD 188
                 P ++RLEA+ DV+N  SQ+VLEK GF +EGV+R+++ LKG  RDMVMFS + +D
Sbjct: 126 EIFKEKPEMQRLEALVDVDNVGSQKVLEKVGFVKEGVMRKFMYLKGNVRDMVMFSFLPSD 185



>AT3G22560.1 | chr3:7998915-7999442 REVERSE LENGTH=176
          Length = 175

 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 105/183 (57%), Gaps = 14/183 (7%)

Query: 6   EAAEVTLREFTEADAEALFAWASDPRVVRFQRRDAYSHVDEARRYIVDKVLPHPWYRAIC 65
           E+  + LR F  +DAE +F WA D  V R+ R D+ + ++EA+++I++K +PHPW R+I 
Sbjct: 4   ESPRIFLRPFNLSDAEDVFKWAGDDDVTRYLRWDSVNSLEEAKQHILNKAIPHPWRRSIS 63

Query: 66  VAGADRPVGSISVKPADDLPLPEPESETGRLRSGCCRASVGYRVAHAHWGRGXXXXXXXX 125
           +      +G +SVK         P+S  GR     CRA + Y VA   WGRG        
Sbjct: 64  LLQDGHSIGYVSVK---------PDSGDGR-----CRADLAYAVAKEFWGRGIATAAVRM 109

Query: 126 XXXXXXXXWPWLERLEAVADVENPASQRVLEKAGFAREGVLRRYVVLKGRPRDMVMFSRV 185
                   +P + RL+AV +VEN ASQRVLEKAGF +EG+L +Y   KG  RDM ++S V
Sbjct: 110 AVEQALEDFPEVVRLQAVVEVENKASQRVLEKAGFRKEGLLEKYGFSKGVIRDMFLYSYV 169

Query: 186 RAD 188
           + D
Sbjct: 170 KDD 172



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,051,973
Number of extensions: 154801
Number of successful extensions: 321
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 3
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)