Os03g0794200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GCN5-related N-acetyltransferase domain containing protein.
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Os03g0794200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GCN5-related N-acetyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.59 | 0.547 | 9.58 | 0.137 | 1.68 | 1.61 | 0.93 | -1.1 | -0.293 | 9.29 | 15.51 | 228 | -- | -- |
| 138.26 | 0.548 | 9.58 | 0.104 | 1.75 | 1.78 | 1.69 | -- | -0.305 | 9.84 | 14.05 | 237 | -- | -- |
| 137.7 | 0.547 | 9.57 | 0.195 | 1.76 | 1.58 | -- | -1.25 | -0.247 | 9.1 | 16.43 | 204 | -- | -- |
| 148.67 | 0.568 | 9.57 | 0.175 | 1.69 | 1.47 | -- | -- | -0.296 | 8.87 | 17.67 | 200 | -- | -- |
| 163.86 | 0.596 | 9.62 | 0.161 | -- | 2.35 | -- | -1.17 | -0.277 | -- | 4.48 | 711 | -- | -- |
| 177.38 | 0.624 | 9.61 | 0.073 | 1.86 | -- | 0.276 | -- | -0.386 | 5.67 | -- | -- | -- | -- |
| 177.55 | 0.624 | 9.61 | 0.074 | 1.86 | -- | -- | -- | -0.387 | 5.64 | -- | -- | -- | -- |
| 162.28 | 0.593 | 9.62 | 0.194 | -- | 2.41 | -- | -- | -0.269 | -- | 4.582 | 724 | -- | -- |
| 149.34 | 0.569 | 9.58 | -- | 1.7 | 1.48 | -- | -- | -0.318 | 8.97 | 16.19 | 203 | -- | -- |
| 357.27 | 0.883 | 9.64 | 0.134 | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
| 177.7 | 0.624 | 9.61 | -- | 1.86 | -- | -- | -- | -0.396 | 5.64 | -- | -- | -- | -- |
| 163.21 | 0.595 | 9.63 | -- | -- | 2.41 | -- | -- | -0.291 | -- | 5.251 | 724 | -- | -- |
| 357.74 | 0.883 | 9.64 | -- | -- | -- | -- | -- | -0.358 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.76 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 2 | 129.93 | radiation | 20 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 3 | 130.00 | radiation | 20 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 13 | 131.84 | radiation | 10 | 270 | < th | dose independent | rect. | 14 | 17 |
| 25 | 132.90 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 20 |
| 27 | 133.06 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 38 | 134.06 | radiation | 10 | 270 | < th | dose independent | rect. | 9 | 22 |
| 61 | 135.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 94 | 136.22 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 22 |
| 104 | 136.63 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 10 |
| 156 | 138.10 | radiation | 20 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 168 | 138.41 | radiation | 20 | 270 | < th | dose dependent | no | NA | NA |
| 169 | 138.42 | radiation | 1 | 270 | > th | dose independent | sin | 0 | NA |
| 181 | 138.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 185 | 138.70 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 22 |
| 206 | 139.05 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 232 | 139.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 15 |
| 233 | 139.58 | humidity | 70 | 270 | > th | dose independent | rect. | 14 | 17 |
| 252 | 139.73 | radiation | 10 | 30 | < th | dose independent | rect. | 5 | 19 |
| 284 | 139.85 | radiation | 10 | 270 | > th | dose independent | rect. | 15 | 23 |
| 297 | 140.03 | radiation | 10 | 270 | > th | dose independent | no | NA | NA |
| 376 | 140.03 | radiation | 20 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 449 | 140.90 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 15 |
| 457 | 141.19 | radiation | 10 | 270 | > th | dose independent | rect. | 13 | 23 |
| 473 | 141.44 | radiation | 10 | 90 | < th | dose independent | rect. | 4 | 22 |
| 517 | 141.79 | radiation | 10 | 270 | < th | dose dependent | sin | 0 | NA |
| 519 | 141.80 | radiation | 10 | 270 | < th | dose independent | no | NA | NA |
| 554 | 142.05 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 16 | 15 |
| 566 | 142.25 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 570 | 142.30 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 588 | 142.49 | humidity | 50 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 732 | 143.01 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 17 |
| 748 | 143.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 8 |
| 754 | 143.11 | radiation | 10 | 270 | > th | dose independent | rect. | 11 | 23 |
| 791 | 143.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 819 | 143.50 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 15 |
| 821 | 143.50 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 848 | 143.78 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 6 |
| 885 | 143.99 | humidity | 60 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 958 | 144.52 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 17 | 15 |