BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0748100 Os03g0748100|AK108283
(276 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0748100 Similar to Short-chain type dehydrogenase/redu... 414 e-116
Os06g0185100 Glucose/ribitol dehydrogenase family protein 234 5e-62
Os10g0456100 Similar to Brn1-like protein 164 6e-41
Os07g0561500 Glucose/ribitol dehydrogenase family protein 159 2e-39
Os07g0170033 Glucose/ribitol dehydrogenase family protein 149 2e-36
Os07g0170000 Similar to Brn1-like protein 141 5e-34
AK119939 86 4e-17
Os05g0140800 Similar to Dormancy related protein (Fragment) 70 2e-12
>Os03g0748100 Similar to Short-chain type dehydrogenase/reductase (EC 1.-.-.-)
Length = 276
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/276 (78%), Positives = 217/276 (78%)
Query: 1 MEASSNTNAMAGVMAPLMLHXXXXXXXXXXXXXXXXXXXHLASLGARVAVAYIGDPAPAN 60
MEASSNTNAMAGVMAPLMLH HLASLGARVAVAYIGDPAPAN
Sbjct: 1 MEASSNTNAMAGVMAPLMLHGRVAIVTGGAGGIGSAVSRHLASLGARVAVAYIGDPAPAN 60
Query: 61 ELVSGINDGYLRAEEEEKRGPRAIAVEADVSXXXXXXXXXXXXXXXXGGEIHILVTTAAV 120
ELVSGINDGYLRAEEEEKRGPRAIAVEADVS GGEIHILVTTAAV
Sbjct: 61 ELVSGINDGYLRAEEEEKRGPRAIAVEADVSDAARVRALFDAAAAAFGGEIHILVTTAAV 120
Query: 121 LDFAYPALAETSEAAYDAMFGVNARGTFLCCXXXXXXXXXXXXXXIVTFSSSGVGSLRPG 180
LDFAYPALAETSEAAYDAMFGVNARGTFLCC IVTFSSSGVGSLRPG
Sbjct: 121 LDFAYPALAETSEAAYDAMFGVNARGTFLCCREAANRLARGGRGRIVTFSSSGVGSLRPG 180
Query: 181 XXXXXXXXXXVEVMTKILARELRGTGITANAVAPGSTGTPMMYTGKTEEDMARYIAEAPL 240
VEVMTKILARELRGTGITANAVAPGSTGTPMMYTGKTEEDMARYIAEAPL
Sbjct: 181 YAAYAASKAAVEVMTKILARELRGTGITANAVAPGSTGTPMMYTGKTEEDMARYIAEAPL 240
Query: 241 GRLGMPDDIAPLVGFLASDAGGWINAQVIRCNGGTI 276
GRLGMPDDIAPLVGFLASDAGGWINAQVIRCNGGTI
Sbjct: 241 GRLGMPDDIAPLVGFLASDAGGWINAQVIRCNGGTI 276
>Os06g0185100 Glucose/ribitol dehydrogenase family protein
Length = 283
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 123/237 (51%), Positives = 145/237 (61%), Gaps = 8/237 (3%)
Query: 40 HLASLGARVAVAYIGDPAPANELVSGINDGYLRAEEEEKRGPRAIAVEADVSXXXXXXXX 99
HL SLGARV V Y+GDPAPA +LV+ +ND PRA+AV ADVS
Sbjct: 55 HLVSLGARVVVGYVGDPAPAEQLVASLND--------SATAPRAVAVAADVSDHAQVSRL 106
Query: 100 XXXXXXXXGGEIHILVTTAAVLDFAYPALAETSEAAYDAMFGVNARGTFLCCXXXXXXXX 159
G ++H+LV A V D AYP +A+TS +D F VNARGTFLCC
Sbjct: 107 FDAAREAFGPDLHVLVAAAGVQDGAYPRIADTSPEQWDRAFAVNARGTFLCCREAARRLA 166
Query: 160 XXXXXXIVTFSSSGVGSLRPGXXXXXXXXXXVEVMTKILARELRGTGITANAVAPGSTGT 219
+VTFSSS VGSLRPG VE MTK+LA+EL GTGITAN+VAPG T
Sbjct: 167 RGGGGRVVTFSSSNVGSLRPGYGAYVATKAAVEAMTKVLAKELAGTGITANSVAPGPVAT 226
Query: 220 PMMYTGKTEEDMARYIAEAPLGRLGMPDDIAPLVGFLASDAGGWINAQVIRCNGGTI 276
PM Y GK+EE +A E P+GR+G P D+AP+VGFL +DA GWIN QVIR NGG I
Sbjct: 227 PMFYAGKSEERVAAVAGECPMGRIGEPMDVAPVVGFLCTDAAGWINGQVIRVNGGYI 283
>Os10g0456100 Similar to Brn1-like protein
Length = 261
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 126/239 (52%), Gaps = 15/239 (6%)
Query: 40 HLASLGARVAVAYIGDPAPANELVSGINDGYLRAEEEEKRG----PRAIAVEADVSXXXX 95
HLASLGARV V Y + A A+ + +N RG PRA+AV ADVS
Sbjct: 32 HLASLGARVVVNYASNSANADAFAADLN----------SRGAAALPRAVAVRADVSDPAA 81
Query: 96 XXXXXXXXXXXXGGEIHILVTTAAVLDFAYPALAETSEAAYDAMFGVNARGTFLCCXXXX 155
G HI+V A +L+ YP+LA+T+ +DAM VN RGTFL C
Sbjct: 82 VRALFDRTEEAFGTPPHIVVACAGLLESKYPSLADTAVEDFDAMLAVNVRGTFLVCREAA 141
Query: 156 XXXXXXXXXXIVTFSSSGVGSLRPGXXXXXXXXXXVEVMTKILARELRGTGITANAVAPG 215
+VTFSSS +G+L PG VE MT+I+A+E+ G+TAN VAPG
Sbjct: 142 NRFPAGAGGRVVTFSSSILGTLLPGYAAYTATNGAVEAMTRIMAKEVAAKGVTANVVAPG 201
Query: 216 STGTPMMYTGKTEEDMARYIAEAPLGRLGMPDDIAPLVGFLASDAGGWINAQVIRCNGG 274
T + GK +E + + E +GR+ D+AP+V FL SDA W+N QVIR NGG
Sbjct: 202 PVRTELFMAGK-DEAFVKKVEERSMGRIAETTDVAPVVAFLVSDAAAWVNGQVIRVNGG 259
>Os07g0561500 Glucose/ribitol dehydrogenase family protein
Length = 265
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 125/238 (52%), Gaps = 15/238 (6%)
Query: 40 HLASLGARVAVAYIGDPAPANELVSGINDGYLRAEEEEKRGPRAIAVEADVSXXXXXXXX 99
HL++LGA V V Y A A+ L +G+ PRA+AV ADV+
Sbjct: 42 HLSALGASVVVGYASSAAKADALAAGL--------------PRAVAVRADVADEAGVRSL 87
Query: 100 XXXXXXXXG-GEIHILVTTAAVLDFAYPALAETSEAAYDAMFGVNARGTFLCCXXXXXXX 158
G G HI+V AAVLD YP L +T+ A +D F VN RG FLC
Sbjct: 88 FDAAESAFGAGAPHIVVANAAVLDDKYPTLVDTATADFDRTFAVNTRGAFLCLREAAHRL 147
Query: 159 XXXXXXXIVTFSSSGVGSLRPGXXXXXXXXXXVEVMTKILARELRGTGITANAVAPGSTG 218
IV +SS VGS G VE M + +A+EL+GT ITAN VAPG+T
Sbjct: 148 PRGGGGRIVAITSSVVGSHPTGYSAYTASKAAVEAMVRTMAKELKGTRITANCVAPGATA 207
Query: 219 TPMMYTGKTEEDMARYIAEAPLGRLGMPDDIAPLVGFLASDAGGWINAQVIRCNGGTI 276
T M + GK+EE + A P+GRLG DIAP+VGFL +DA W+N QVIR NGG +
Sbjct: 208 TDMFFAGKSEERVDEIKATNPMGRLGEAGDIAPVVGFLCTDAAEWVNGQVIRVNGGYV 265
>Os07g0170033 Glucose/ribitol dehydrogenase family protein
Length = 265
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 102/196 (52%), Gaps = 2/196 (1%)
Query: 81 PRAIAVEADVSXXXXXXXXXXXXXXXXGGEIHILVTTAAVLDFAYPALAETSEAAYDAMF 140
PRA+AV+ADVS G HILV A +LD YP L+ T A +D
Sbjct: 71 PRAVAVKADVSDETGVRALFDAAESAFGAGAHILVANAGLLDDRYPHLSNTPTADFDRTI 130
Query: 141 GVNARGTFLCCXXXXXXXXXXXXXXIVTFSSSGVGSLRPGXXXXXXXXXXVEVMTKILAR 200
VN RG FLC IV +SS V SL PG VE M + +A+
Sbjct: 131 AVNLRGAFLCLREAANRLPRGGR--IVAITSSVVASLPPGYSAYTASKAAVEAMVRTMAK 188
Query: 201 ELRGTGITANAVAPGSTGTPMMYTGKTEEDMARYIAEAPLGRLGMPDDIAPLVGFLASDA 260
EL+GTGITAN VAPG T M + GK E + R + P GRLG P DIA +VGFL +DA
Sbjct: 189 ELKGTGITANCVAPGPVATDMFFAGKDEAWVKRTVDANPTGRLGDPGDIAAMVGFLCTDA 248
Query: 261 GGWINAQVIRCNGGTI 276
W N QVIR NGG +
Sbjct: 249 AEWTNGQVIRVNGGYV 264
>Os07g0170000 Similar to Brn1-like protein
Length = 261
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 120/236 (50%), Gaps = 15/236 (6%)
Query: 40 HLASLGARVAVAYIGDPAPANELVSGINDGYLRAEEEEKRGPRAIAVEADVSXXX-XXXX 98
HLASLGA V V Y PA L + + P A+AV+ADVS
Sbjct: 38 HLASLGASVVVGYASSSGPAEALAAEL--------------PSAVAVKADVSDEAGARSL 83
Query: 99 XXXXXXXXXGGEIHILVTTAAVLDFAYPALAETSEAAYDAMFGVNARGTFLCCXXXXXXX 158
GG HILV A + YP LA+TS A +DA F VNARG FLC
Sbjct: 84 FDAAEAAFGGGAAHILVACAGLAVSTYPRLADTSAADFDAAFAVNARGAFLCLREAANRL 143
Query: 159 XXXXXXXIVTFSSSGVGSLRPGXXXXXXXXXXVEVMTKILARELRGTGITANAVAPGSTG 218
IV SS+ +L PG VE M +++A+E+ + +T N VAPG
Sbjct: 144 RRGGGGRIVAVSSTLAATLLPGYAAYAASKAAVEAMVRVMAKEVGASRVTVNCVAPGPVA 203
Query: 219 TPMMYTGKTEEDMARYIAEAPLGRLGMPDDIAPLVGFLASDAGGWINAQVIRCNGG 274
T + + GK+EE + R+ A P+GRLG DIAP+VGFL +DA W+N QVIR NGG
Sbjct: 204 TELFFAGKSEEAVERFKAGNPMGRLGEVGDIAPVVGFLCTDAAEWVNGQVIRVNGG 259
>AK119939
Length = 310
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 107/250 (42%), Gaps = 30/250 (12%)
Query: 41 LASLGARVAVAYIGDPAPANELVSGINDGYLRAEEEEKRGPRAIAVEADVSXXXXXXXXX 100
L GA V V Y A+E+V I EE G +AI+++ADVS
Sbjct: 74 LGRRGASVVVNYANSKESADEVVKLI--------EETGTGAKAISIQADVSKPSEIERLF 125
Query: 101 XXXXXXXGGEIHILVTTAAVLDFAYPALAETSEAAYDAMFGVNARGTFLCCXXXXXXXXX 160
G +I I+++ + ++ E +E YD +F +NAR F
Sbjct: 126 QESKAHFG-KIDIVMSNSGTE--SWDKTEEITEEKYDHVFNLNARAQFFVGQAAWKHLED 182
Query: 161 XXXXXIVTFSSSGVGSLRPGXXXXXXXXXXVEVMTKILARELRGTGITANAVAPGST--- 217
+++ ++G+ +R + M K A + GIT N VAPG
Sbjct: 183 NGRLILMSSIAAGLLGVRDHALYNASKMAVIG-MIKAFATDFGRRGITVNGVAPGGIKSD 241
Query: 218 ------------GTPMMYTGKTEEDMARYIAEAPLGRLGMPDDIAPLVGFLASDAGGWIN 265
GTP + E+ MA + PLGR P+D+A +VGFL+S+ GGW+N
Sbjct: 242 MFTQNAWHYIPGGTPDIPAATIEKMMADH---CPLGRCATPEDVARVVGFLSSEDGGWVN 298
Query: 266 AQVIRCNGGT 275
QVI +GG+
Sbjct: 299 GQVITISGGS 308
>Os05g0140800 Similar to Dormancy related protein (Fragment)
Length = 365
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 96/240 (40%), Gaps = 14/240 (5%)
Query: 45 GARVAVAYIG--DPAPANELVSGINDGYLRAEEEEKRGPRAIAVEADVSXXXXXXXXXXX 102
GA VA Y+ + A E + + D +RA K +A+ AD+
Sbjct: 129 GATVAFTYVKGQEEKDAEETLRALRD--IRARTGAKD---PMAIPADLGYDDNCRKVVDE 183
Query: 103 XXXXXGGEIHILVTTAAVLDFAYPALAETSEAAYDAMFGVNARGTFLCCXXXXXXXXXXX 162
GG I ILV AA + P++ + +E + +F N F
Sbjct: 184 VAGAYGGAIDILVNNAAE-QYERPSITDITEDDLERVFRTNIFSYFFMSKHAVKRMRDRR 242
Query: 163 XX------XIVTFSSSGVGSLRPGXXXXXXXXXXVEVMTKILARELRGTGITANAVAPGS 216
I+ SS + T+ LA +L GI N VAPG
Sbjct: 243 GGAGAGGCSIINTSSINAYKGNKTLLDYTATKGAIVAFTRALALQLAEEGIRVNGVAPGP 302
Query: 217 TGTPMMYTGKTEEDMARYIAEAPLGRLGMPDDIAPLVGFLASDAGGWINAQVIRCNGGTI 276
TP++ EE + ++ ++ P+GR G P ++AP FLASD +++ Q++ NGG I
Sbjct: 303 IWTPLIPASFAEEKVRQFGSQVPMGRAGQPSEVAPSFVFLASDDASYMSGQMLHVNGGVI 362
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,052,399
Number of extensions: 241066
Number of successful extensions: 640
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 9
Length of query: 276
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 177
Effective length of database: 11,866,615
Effective search space: 2100390855
Effective search space used: 2100390855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)