Os10g0456100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Brn1-like protein.
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Os10g0456100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Brn1-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 484.45 | 1.03 | 11.4 | 5.11 | 2.77 | -0.733 | 0.592 | -10.5 | 0.565 | 20.3 | 30.02 | 1364 | -- | -- |
| 487.12 | 1.03 | 11.2 | 7.03 | 2.79 | -1.92 | 0.567 | -- | 0.81 | 20.3 | 27.84 | 1348 | -- | -- |
| 485.52 | 1.03 | 11.4 | 5.11 | 2.78 | -0.747 | -- | -10.4 | 0.566 | 20.3 | 30.02 | 1360 | -- | -- |
| 487.6 | 1.03 | 11.1 | 7.04 | 2.79 | -1.98 | -- | -- | 0.842 | 20.2 | 27.84 | 1351 | -- | -- |
| 907.92 | 1.4 | 11.4 | 5 | -- | -0.691 | -- | -10.4 | 0.529 | -- | 29.56 | 1430 | -- | -- |
| 676.1 | 1.22 | 11.1 | 6.45 | 2.78 | -- | 0.641 | -- | 0.96 | 19.9 | -- | -- | -- | -- |
| 677.3 | 1.22 | 11.1 | 6.43 | 2.78 | -- | -- | -- | 0.961 | 19.9 | -- | -- | -- | -- |
| 914.74 | 1.41 | 11 | 7.07 | -- | -1.96 | -- | -- | 0.95 | -- | 26.9 | 1403 | -- | -- |
| 1712.92 | 1.93 | 11.3 | -- | 2.74 | -1.06 | -- | -- | 0.0978 | 20.3 | 33.5 | 1346 | -- | -- |
| 1098.82 | 1.55 | 11 | 6.4 | -- | -- | -- | -- | 0.924 | -- | -- | -- | -- | -- |
| 1766.46 | 1.97 | 11.3 | -- | 2.74 | -- | -- | -- | 0.245 | 20.1 | -- | -- | -- | -- |
| 2132.22 | 2.15 | 11.2 | -- | -- | -0.968 | -- | -- | 0.0199 | -- | 33.5 | 1373 | -- | -- |
| 2178.68 | 2.18 | 11.2 | -- | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 482.79 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 2 | 482.90 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 35 | 483.59 | temperature | 30 | 1440 | > th | dose dependent | sin | 17 | NA |
| 105 | 485.33 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 230 | 485.86 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 289 | 489.99 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 324 | 490.93 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 338 | 491.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 355 | 491.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 358 | 491.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 359 | 491.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 364 | 491.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 389 | 493.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 424 | 493.57 | temperature | 30 | 14400 | > th | dose dependent | sin | 12 | NA |
| 429 | 494.00 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 440 | 494.33 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 488 | 495.03 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 498 | 495.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 505 | 495.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 506 | 495.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 507 | 495.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 537 | 495.71 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 620 | 496.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 694 | 496.95 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 739 | 497.20 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 843 | 497.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 853 | 497.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 857 | 497.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 879 | 497.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 890 | 497.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 898 | 497.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 916 | 497.47 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |