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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0748100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Short-chain type dehydrogenase/reductase (EC 1.-.-.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0433) R2 : 0.165
β1 : 0.424 (0.159) R2dD : 0.0135 R2D : 0.0111
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.968 (0.217) R2dE : 0.0372 R2E : 0.0537
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.45 (0.881) R2dD*E : 0.1 R2D*E : 0.115
γ1 : 0.0198 (0.0926) R2dN8 : 0.000112 R2N8 : -0.00035
σ : 0.811
deviance : 303.08
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 9.234
memory length : 91
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.36
open length of G : 8.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
301.74 0.816 2.83 0.425 0.151 1.04 0.0462 6.45 0.0161 0.965 9.237 91 6.32 8.3
334.25 0.852 2.83 0.378 0.21 1.37 -0.654 -- 0.0321 0.127 8.969 91 6.48 8.15
301.73 0.809 2.83 0.421 0.151 1.05 -- 6.42 0.0165 0.863 9.232 91 6.33 8.28
336.22 0.854 2.82 0.367 0.18 1.36 -- -- 0.0364 0.463 8.958 91 6.5 8.17
303.08 0.811 2.83 0.424 -- 0.968 -- 6.45 0.0198 -- 9.234 91 6.36 8.3
354.74 0.883 2.82 0.355 0.0894 -- 1.09 -- 0.0125 8.55 -- -- -- --
358.23 0.886 2.82 0.387 0.119 -- -- -- 0.0106 6.04 -- -- -- --
337.98 0.856 2.82 0.4 -- 1.28 -- -- 0.0546 -- 8.95 91 6.48 8.16
340.29 0.859 2.82 -- 0.17 1.35 -- -- 0.0135 0.6 8.969 91 6.5 8.23
358.96 0.885 2.83 0.39 -- -- -- -- 0.0133 -- -- -- -- --
362.17 0.89 2.83 -- 0.125 -- -- -- -0.0325 5.88 -- -- -- --
342.19 0.862 2.82 -- -- 1.29 -- -- 0.00911 -- 8.95 91 6.48 8.17
362.98 0.889 2.84 -- -- -- -- -- -0.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 303.50 radiation 10 90 < th dose independent rect. 6 8
5 308.07 radiation 10 90 < th dose independent rect. 5 23
6 310.03 radiation 10 90 < th dose independent rect. 6 21
7 311.42 radiation 10 90 < th dose dependent rect. 7 7
9 313.51 radiation 10 90 < th dose independent rect. 6 11
21 316.07 radiation 10 90 < th dose independent rect. 6 17
25 317.25 radiation 10 90 < th dose independent rect. 17 22
34 318.37 radiation 20 90 < th dose dependent rect. 5 23
36 318.68 radiation 10 10 < th dose independent rect. 10 5
53 320.14 radiation 10 90 < th dose independent sin 22 NA
56 320.44 radiation 10 90 < th dose independent rect. 3 23
57 320.47 radiation 10 90 < th dose independent rect. 11 3
59 320.64 radiation 10 90 < th dose dependent rect. 11 2
60 320.65 radiation 10 10 < th dose dependent rect. 10 4
85 321.58 radiation 10 90 < th dose independent no NA NA
86 321.61 radiation 10 270 < th dose independent rect. 11 1
88 321.79 radiation 10 90 < th dose independent rect. 10 23
101 322.68 radiation 10 90 < th dose independent rect. 19 19
105 322.71 radiation 20 90 < th dose dependent rect. 6 21
136 324.23 radiation 20 10 < th dose dependent rect. 6 22
143 324.68 radiation 10 90 < th dose independent rect. 10 17
146 324.80 humidity 50 4320 > th dose independent rect. 12 5
150 324.98 atmosphere 1015 4320 < th dose independent rect. 15 5
154 325.07 radiation 10 10 < th dose independent rect. 10 16
160 325.20 radiation 10 90 < th dose independent rect. 10 13
162 325.24 atmosphere 1015 4320 < th dose independent rect. 19 1
169 325.34 atmosphere 1015 4320 > th dose dependent rect. 12 3
171 325.35 atmosphere 1015 4320 < th dose independent rect. 13 1
172 325.35 atmosphere 1015 4320 > th dose independent rect. 13 3
183 325.38 atmosphere 1015 4320 < th dose independent rect. 13 3
195 325.40 atmosphere 1015 4320 > th dose independent rect. 12 7
232 325.62 radiation 20 90 < th dose dependent rect. 6 11
239 325.76 humidity 50 4320 < th dose independent rect. 12 5
246 325.87 radiation 10 90 < th dose independent rect. 13 23
247 325.88 humidity 50 4320 > th dose independent rect. 13 1
256 326.07 radiation 10 90 < th dose independent rect. 23 23
291 326.38 humidity 50 4320 > th dose independent rect. 12 17
295 326.40 humidity 50 4320 > th dose independent rect. 12 20
305 326.46 humidity 50 4320 > th dose independent rect. 12 13
309 326.49 radiation 10 90 > th dose independent sin 22 NA
312 326.52 atmosphere 1015 4320 < th dose independent rect. 10 1
325 326.66 atmosphere 1015 4320 > th dose independent rect. 10 1
377 327.06 radiation 10 90 > th dose independent no NA NA
378 327.06 radiation 10 90 > th dose independent rect. 6 12
485 327.38 humidity 50 4320 < th dose dependent rect. 14 3
487 327.40 radiation 10 90 > th dose independent rect. 8 23
500 327.45 radiation 20 90 < th dose dependent rect. 6 17
513 327.59 humidity 50 4320 < th dose independent rect. 13 1
556 327.86 radiation 10 90 < th dose independent rect. 1 23
582 328.03 humidity 60 10 < th dose independent rect. 13 3
604 328.12 radiation 10 90 < th dose independent rect. 21 23
665 328.59 radiation 1 43200 < th dose dependent rect. 23 5
667 328.63 radiation 20 90 < th dose dependent rect. 17 22
695 328.74 wind 1 10 < th dose independent rect. 8 1
697 328.74 wind 1 10 < th dose dependent rect. 8 1
705 328.84 radiation 10 90 > th dose independent rect. 11 23
729 328.91 radiation 10 10 < th dose independent rect. 10 12
734 328.97 radiation 20 90 < th dose dependent sin 21 NA
741 329.00 radiation 1 43200 < th dose dependent rect. 3 1
747 329.01 humidity 50 4320 < th dose dependent sin 13 NA
816 329.31 humidity 50 4320 < th dose independent sin 17 NA
829 329.42 humidity 50 4320 > th dose independent rect. 23 18
842 329.47 humidity 50 4320 > th dose independent rect. 3 14
860 329.50 humidity 50 4320 > th dose independent sin 18 NA
870 329.53 radiation 20 10 < th dose dependent rect. 7 19
877 329.57 humidity 50 4320 > th dose independent rect. 7 10
892 329.65 atmosphere 1015 4320 < th dose independent sin 21 NA
913 329.82 radiation 10 90 > th dose independent rect. 15 23
927 329.94 radiation 20 90 < th dose dependent rect. 15 23
968 330.10 atmosphere 1015 4320 > th dose independent sin 22 NA
991 330.25 radiation 20 90 < th dose dependent rect. 3 23