BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0734900 Os03g0734900|Os03g0734900
         (271 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0734900  Similar to Two-component response regulator-li...   488   e-138
Os03g0684000  Similar to GATA transcription factor 1 (AtGATA-1)   229   1e-60
Os02g0148500  Similar to TIMING OF CAB 1 (Fragment)               165   4e-41
Os06g0698900  Zinc finger, GATA-type domain containing protein     70   2e-12

>Os03g0734900 Similar to Two-component response regulator-like APRR9
           (Pseudo-response regulator 9)
          Length = 271

 Score =  488 bits (1257), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/233 (100%), Positives = 233/233 (100%)

Query: 39  QLTLVYQGEVYVFDPVPPQKVQAVLLVLGGSDMPPGLVSMAVPTTFDEKSTTVAARRVAS 98
           QLTLVYQGEVYVFDPVPPQKVQAVLLVLGGSDMPPGLVSMAVPTTFDEKSTTVAARRVAS
Sbjct: 39  QLTLVYQGEVYVFDPVPPQKVQAVLLVLGGSDMPPGLVSMAVPTTFDEKSTTVAARRVAS 98

Query: 99  LMRFREKRKERCFDKKIRYSVRKEVAQKMKRRKGQFAGRADFGDGSCSSAPCGSTANGED 158
           LMRFREKRKERCFDKKIRYSVRKEVAQKMKRRKGQFAGRADFGDGSCSSAPCGSTANGED
Sbjct: 99  LMRFREKRKERCFDKKIRYSVRKEVAQKMKRRKGQFAGRADFGDGSCSSAPCGSTANGED 158

Query: 159 DHIRETHCQNCGISSRLTPAMRRGPAGPRSLCNACGLMWANKGTLRSPLNAPKMTVQHPA 218
           DHIRETHCQNCGISSRLTPAMRRGPAGPRSLCNACGLMWANKGTLRSPLNAPKMTVQHPA
Sbjct: 159 DHIRETHCQNCGISSRLTPAMRRGPAGPRSLCNACGLMWANKGTLRSPLNAPKMTVQHPA 218

Query: 219 DLSKTGDTDDSKANLCAEHNQTTMKTDTEMVPEQEQKADVLPPTKEEDSMATS 271
           DLSKTGDTDDSKANLCAEHNQTTMKTDTEMVPEQEQKADVLPPTKEEDSMATS
Sbjct: 219 DLSKTGDTDDSKANLCAEHNQTTMKTDTEMVPEQEQKADVLPPTKEEDSMATS 271



>Os03g0684000 Similar to GATA transcription factor 1 (AtGATA-1)
          Length = 319

 Score =  229 bits (585), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/186 (62%), Positives = 143/186 (76%), Gaps = 13/186 (6%)

Query: 39  QLTLVYQGEVYVFDPVPPQKVQAVLLVLGGSDMPPGLVSMAVPTT-----FDE--KSTTV 91
           QLTL++QGEVYVF+ V P+KVQAVLL+LG S+MPPGL +M +P       +D+  + T +
Sbjct: 80  QLTLLFQGEVYVFESVTPEKVQAVLLLLGRSEMPPGLANMVLPNQRENRGYDDLLQRTDI 139

Query: 92  AARRVASLMRFREKRKERCFDKKIRYSVRKEVAQKMKRRKGQFAGRADFGDGSCSSAPC- 150
            A+RVASL+RFREKRKER FDKKIRY+VRKEVA +M+RRKGQFAGRA+  +G   S  C 
Sbjct: 140 PAKRVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRANM-EGESLSPGCE 198

Query: 151 -GSTANGEDDHIRETHCQNCGISSRLTPAMRRGPAGPRSLCNACGLMWANKGTLRSPLNA 209
             S  +G+D   RE+ CQNCG S ++TPAMRRGPAGPR+LCNACGLMWANKGTLR   N 
Sbjct: 199 LASQGSGQDFLSRESKCQNCGTSEKMTPAMRRGPAGPRTLCNACGLMWANKGTLR---NC 255

Query: 210 PKMTVQ 215
           PK  V+
Sbjct: 256 PKAKVE 261



>Os02g0148500 Similar to TIMING OF CAB 1 (Fragment)
          Length = 328

 Score =  165 bits (417), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 115/182 (63%), Gaps = 9/182 (4%)

Query: 40  LTLVYQGEVYVFDPVPPQKVQAVLLVLGGSDMPPGLVSMAVPTTFDEKSTTVAARRVASL 99
           LTL +QGEVYVF+ V  ++VQAVLL+LGG ++ PG  S+   +    K       R+ASL
Sbjct: 107 LTLSFQGEVYVFESVSAERVQAVLLLLGGRELAPGSGSVPSSSAAYSKKMNFP-HRMASL 165

Query: 100 MRFREKRKERCFDKKIRYSVRKEVAQKMKRRKGQF------AGRADFGDGSCSSAPCGST 153
           MRFREKRKER FDKKIRY+VRKEVA +M+R +GQF      A  A     S   +P    
Sbjct: 166 MRFREKRKERNFDKKIRYTVRKEVALRMQRNRGQFTSSKSKAEEATSVITSSEGSPNWGA 225

Query: 154 ANGEDDHIRETHCQNCGISSRLTPAMRRGPAGPRSLCNACGLMWANKGTLRSPLNAPKMT 213
             G      E  C +CGIS+  TP MRRGP GPR+LCNACGLMWANKGT+R     P + 
Sbjct: 226 VEGRPPSAAE--CHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTMREVTKGPPVP 283

Query: 214 VQ 215
           +Q
Sbjct: 284 LQ 285



>Os06g0698900 Zinc finger, GATA-type domain containing protein
          Length = 57

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/35 (74%), Positives = 31/35 (88%)

Query: 166 CQNCGISSRLTPAMRRGPAGPRSLCNACGLMWANK 200
           C +CGI+++ TP MRRGP GPR+LCNACGLMWANK
Sbjct: 18  CHHCGINAKATPMMRRGPDGPRTLCNACGLMWANK 52



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,069,702
Number of extensions: 393367
Number of successful extensions: 1212
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 4
Length of query: 271
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 172
Effective length of database: 11,866,615
Effective search space: 2041057780
Effective search space used: 2041057780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)