Os03g0734900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Two-component response regulator-like APRR9 (Pseudo-response regulator 9).
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Os03g0734900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Two-component response regulator-like APRR9 (Pseudo-response regulator 9).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.55 | 0.276 | 11.5 | -1.1 | 0.982 | -0.742 | 1.06 | 1.46 | -0.159 | 5.49 | 25.4 | 23 | -- | -- |
| 35.32 | 0.277 | 11.5 | -1.25 | 0.981 | -0.58 | 0.861 | -- | -0.197 | 5.29 | 25.35 | 92 | -- | -- |
| 37.04 | 0.283 | 11.5 | -1.13 | 0.983 | -0.74 | -- | 1.08 | -0.182 | 5.35 | 25.7 | 23 | -- | -- |
| 36.67 | 0.282 | 11.5 | -1.25 | 0.943 | -0.621 | -- | -- | -0.216 | 4.98 | 25.7 | 206 | -- | -- |
| 63.97 | 0.373 | 11.5 | -1.03 | -- | -1.38 | -- | 1.01 | -0.0357 | -- | 24.77 | 260 | -- | -- |
| 40.84 | 0.3 | 11.5 | -1.35 | 1.19 | -- | 0.975 | -- | -0.241 | 5 | -- | -- | -- | -- |
| 43.18 | 0.308 | 11.5 | -1.35 | 1.2 | -- | -- | -- | -0.246 | 4.88 | -- | -- | -- | -- |
| 63.96 | 0.372 | 11.5 | -1.09 | -- | -1.4 | -- | -- | -0.106 | -- | 24.72 | 264 | -- | -- |
| 76 | 0.406 | 11.5 | -- | 0.766 | -0.938 | -- | -- | -0.0426 | 5.13 | 24.99 | 200 | -- | -- |
| 118.82 | 0.509 | 11.6 | -1.3 | -- | -- | -- | -- | -0.215 | -- | -- | -- | -- | -- |
| 91.15 | 0.447 | 11.5 | -- | 1.17 | -- | -- | -- | -0.0955 | 4.92 | -- | -- | -- | -- |
| 94.47 | 0.453 | 11.5 | -- | -- | -1.54 | -- | -- | 0.0359 | -- | 24.5 | 263 | -- | -- |
| 163.73 | 0.597 | 11.5 | -- | -- | -- | -- | -- | -0.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 6 | 31.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 15 | 31.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 18 | 31.78 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 4 |
| 33 | 32.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 9 |
| 36 | 32.03 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 46 | 32.17 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 8 |
| 58 | 32.28 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 181 | 33.24 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 207 | 33.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 13 |
| 268 | 33.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 295 | 33.82 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 350 | 34.04 | radiation | 40 | 720 | < th | dose independent | rect. | 2 | 10 |
| 374 | 34.12 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 15 |
| 438 | 34.23 | humidity | 90 | 720 | < th | dose independent | rect. | 6 | 10 |
| 443 | 34.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 448 | 34.24 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 502 | 34.34 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 547 | 34.44 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 566 | 34.47 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 581 | 34.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 589 | 34.49 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 597 | 34.50 | radiation | 40 | 720 | < th | dose independent | rect. | 17 | 19 |
| 610 | 34.52 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 630 | 34.55 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 17 |
| 633 | 34.56 | radiation | 40 | 720 | < th | dose independent | rect. | 7 | 5 |
| 650 | 34.58 | temperature | 25 | 720 | < th | dose independent | sin | 5 | NA |
| 651 | 34.58 | radiation | 40 | 720 | < th | dose independent | rect. | 14 | 22 |
| 653 | 34.58 | temperature | 25 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 654 | 34.58 | temperature | 25 | 14400 | < th | dose dependent | rect. | 7 | 4 |
| 656 | 34.58 | temperature | 25 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 672 | 34.60 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 20 |
| 710 | 34.64 | temperature | 25 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 775 | 34.69 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 785 | 34.69 | radiation | 40 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 788 | 34.69 | humidity | 80 | 720 | > th | dose dependent | rect. | 5 | 11 |
| 806 | 34.70 | humidity | 80 | 720 | > th | dose dependent | sin | 1 | NA |
| 817 | 34.71 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 823 | 34.71 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 864 | 34.73 | radiation | 40 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 869 | 34.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 937 | 34.77 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 23 |
| 945 | 34.77 | temperature | 25 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 952 | 34.78 | radiation | 40 | 720 | < th | dose independent | rect. | 24 | 14 |
| 961 | 34.79 | temperature | 30 | 270 | < th | dose independent | sin | 10 | NA |
| 966 | 34.79 | temperature | 10 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 984 | 34.80 | temperature | 25 | 14400 | < th | dose dependent | sin | 23 | NA |