Os03g0684000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GATA transcription factor 1 (AtGATA-1).
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Os03g0684000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GATA transcription factor 1 (AtGATA-1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.62 | 0.223 | 12.1 | -0.759 | 0.404 | 0.474 | 0.0268 | 0.909 | -0.24 | 7.97 | 27.8 | 309 | -- | -- |
| 23.39 | 0.225 | 12 | -0.618 | 0.435 | 0.482 | 0.161 | -- | -0.198 | 8.02 | 27.69 | 269 | -- | -- |
| 22.56 | 0.221 | 12.1 | -0.747 | 0.415 | 0.472 | -- | 0.866 | -0.235 | 8.11 | 27.8 | 281 | -- | -- |
| 23.44 | 0.225 | 12 | -0.605 | 0.419 | 0.504 | -- | -- | -0.195 | 8.22 | 27.68 | 270 | -- | -- |
| 27.95 | 0.246 | 12.1 | -0.713 | -- | 0.726 | -- | 0.771 | -0.193 | -- | 28.2 | 443 | -- | -- |
| 31.35 | 0.262 | 12.1 | -0.737 | 0.68 | -- | 0.673 | -- | -0.271 | 6.42 | -- | -- | -- | -- |
| 32.44 | 0.267 | 12.1 | -0.727 | 0.683 | -- | -- | -- | -0.272 | 6.56 | -- | -- | -- | -- |
| 28.36 | 0.248 | 12 | -0.537 | -- | 0.729 | -- | -- | -0.132 | -- | 27.6 | 449 | -- | -- |
| 32.61 | 0.266 | 12 | -- | 0.365 | 0.606 | -- | -- | -0.102 | 9.02 | 27.6 | 272 | -- | -- |
| 56.7 | 0.352 | 12.1 | -0.71 | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
| 46.37 | 0.319 | 12 | -- | 0.673 | -- | -- | -- | -0.192 | 6.62 | -- | -- | -- | -- |
| 36.03 | 0.28 | 12 | -- | -- | 0.815 | -- | -- | -0.0712 | -- | 27.56 | 464 | -- | -- |
| 70.01 | 0.391 | 12.1 | -- | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.56 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 3 | 22.69 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 6 | 22.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 9 | 22.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 38 | 23.10 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 13 |
| 42 | 23.12 | temperature | 15 | 720 | > th | dose dependent | sin | 3 | NA |
| 66 | 23.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 11 |
| 78 | 23.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 104 | 23.37 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 109 | 23.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 114 | 23.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 192 | 23.58 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 198 | 23.58 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 199 | 23.59 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 12 |
| 300 | 23.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 381 | 23.82 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 424 | 23.87 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 446 | 23.89 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 7 |
| 495 | 23.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 657 | 24.02 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 796 | 24.21 | temperature | 30 | 270 | < th | dose independent | sin | 3 | NA |