BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0684000 Os03g0684000|AK105025
(319 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G21175.1 | chr3:7422832-7424598 FORWARD LENGTH=298 203 8e-53
AT1G51600.1 | chr1:19133176-19135252 FORWARD LENGTH=303 200 7e-52
AT4G24470.3 | chr4:12645785-12647734 FORWARD LENGTH=318 173 1e-43
AT2G24790.1 | chr2:10566959-10567946 FORWARD LENGTH=295 52 3e-07
AT5G57660.1 | chr5:23355573-23356729 FORWARD LENGTH=356 52 4e-07
AT3G02380.1 | chr3:487438-488624 REVERSE LENGTH=348 51 9e-07
AT2G46790.1 | chr2:19232874-19234901 FORWARD LENGTH=469 51 9e-07
AT5G15850.1 | chr5:5176297-5177473 REVERSE LENGTH=356 51 1e-06
AT5G61380.1 | chr5:24675540-24678176 FORWARD LENGTH=619 50 1e-06
AT5G24930.1 | chr5:8589325-8590949 FORWARD LENGTH=407 50 1e-06
AT2G46670.1 | chr2:19164589-19165233 REVERSE LENGTH=184 50 2e-06
AT3G24050.1 | chr3:8686060-8687462 FORWARD LENGTH=275 48 8e-06
>AT3G21175.1 | chr3:7422832-7424598 FORWARD LENGTH=298
Length = 297
Score = 203 bits (517), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 109/186 (58%), Positives = 128/186 (68%), Gaps = 7/186 (3%)
Query: 79 NQLTLLFQGEVYVFESVTPEKVQAVLLLLGRSEMPPGLANMVLPNQRENR--GYDDLLQR 136
+QLTL FQG+VYVF+ V+PEKVQAVLLLLG E+P L + + NR G QR
Sbjct: 78 DQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQR 137
Query: 137 TDIPAKRVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRANMEGESLSPG 196
+P +R+ASL+RFREKRK RNFDK IRY VRKEVALRMQR+KGQF + +S S G
Sbjct: 138 LSVP-QRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTG 196
Query: 197 CELASQGS----GQDFLSRESKCQNCGTSEKMTPAMRRGPAGPRTLCNACGLMWANKGTL 252
+ S S G + E C++CGTSEK TP MRRGP GPRTLCNACGLMWANKGTL
Sbjct: 197 SDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTL 256
Query: 253 RNCPKA 258
R+ K
Sbjct: 257 RDLSKV 262
>AT1G51600.1 | chr1:19133176-19135252 FORWARD LENGTH=303
Length = 302
Score = 200 bits (509), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/193 (59%), Positives = 131/193 (67%), Gaps = 21/193 (10%)
Query: 79 NQLTLLFQGEVYVFESVTPEKVQAVLLLLGRSEMP----PGLANMVLPNQRENR--GYDD 132
+QLTL FQG+VYVF+SV PEKVQAVLLLLG E+P PGL + P+Q NR
Sbjct: 82 DQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGS---PHQ-NNRVSSLPG 137
Query: 133 LLQRTDIPAKRVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRANMEGES 192
QR IP +R+ASL+RFREKRK RNFDKKIRY VRKEVALRMQR KGQF + E+
Sbjct: 138 TPQRFSIP-QRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEA 196
Query: 193 LSPGCELASQGSGQDFL-------SRESKCQNCGTSEKMTPAMRRGPAGPRTLCNACGLM 245
S G +S GS Q + +E C++CG EK TP MRRGPAGPRTLCNACGLM
Sbjct: 197 ASAG---SSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLM 253
Query: 246 WANKGTLRNCPKA 258
WANKG R+ KA
Sbjct: 254 WANKGAFRDLSKA 266
>AT4G24470.3 | chr4:12645785-12647734 FORWARD LENGTH=318
Length = 317
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/192 (49%), Positives = 121/192 (63%), Gaps = 6/192 (3%)
Query: 75 PGSPNQLTLLFQGEVYVFESVTPEKVQAVLLLLGRS-EMPPGLANMVLPNQRENRGYDDL 133
P NQLT+ F+G+VYVF++V +KV AVL LLG S E+ PG M L Q+ + +
Sbjct: 78 PEGANQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEY 137
Query: 134 LQRTDIPAKRVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRANMEGESL 193
R +P +R SL RFR+KR R F+KK+RY VR+EVALRM R KGQF +G +
Sbjct: 138 QSRCSLP-QRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDG-AY 195
Query: 194 SPGCELASQGSGQDFLSRESKCQNCGTSEKMTPAMRRGPAGPRTLCNACGLMWANKGTLR 253
+ G + Q S QD E C +CG S K TP MRRGP+GPRTLCNACGL WAN+GTLR
Sbjct: 196 NSGTD---QDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLR 252
Query: 254 NCPKAKVESSVV 265
+ K E+ +
Sbjct: 253 DLSKKTEENQLA 264
>AT2G24790.1 | chr2:10566959-10567946 FORWARD LENGTH=295
Length = 294
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%)
Query: 140 PAKRVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRAN 187
PA+R A ++R+REKRK R F+K IRYA RK A R KG+FA R +
Sbjct: 226 PAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 273
>AT5G57660.1 | chr5:23355573-23356729 FORWARD LENGTH=356
Length = 355
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%)
Query: 143 RVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRANMEGESLSPGCELASQ 202
R A ++R+REKRK R F+K IRYA RK A R KG+FA R E + + AS
Sbjct: 285 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDIFLSHVYASA 344
Query: 203 GSGQ 206
Q
Sbjct: 345 AHAQ 348
>AT3G02380.1 | chr3:487438-488624 REVERSE LENGTH=348
Length = 347
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 140 PAKRVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGR 185
P +R A ++R+REK+K R FDK IRYA RK A R KG+FA R
Sbjct: 275 PMEREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 320
>AT2G46790.1 | chr2:19232874-19234901 FORWARD LENGTH=469
Length = 468
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 141 AKRVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRANMEGESLS 194
++R A+L++FR KRK+R FDKK+RY RK++A + R KGQF N + + S
Sbjct: 415 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSDASTKS 468
>AT5G15850.1 | chr5:5176297-5177473 REVERSE LENGTH=356
Length = 355
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 140 PAKRVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRANMEGES 192
P R A ++R+REK+K R F+K IRYA RK A + R KG+FA + +++ E+
Sbjct: 283 PRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEA 335
>AT5G61380.1 | chr5:24675540-24678176 FORWARD LENGTH=619
Length = 618
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 142 KRVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRAN 187
+R +L++FR KR +R FDKKIRY RK +A R R KGQF + N
Sbjct: 532 RREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMN 577
>AT5G24930.1 | chr5:8589325-8590949 FORWARD LENGTH=407
Length = 406
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 141 AKRVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRAN 187
A+R A ++R+REKRK R F+K IRYA RK A R KG+FA R +
Sbjct: 337 AEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 383
>AT2G46670.1 | chr2:19164589-19165233 REVERSE LENGTH=184
Length = 183
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 141 AKRVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRANMEGESLS 194
++R A+L++FR KRK+R FDKK+RY RK++A + R KGQF N + + S
Sbjct: 130 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSDASTKS 183
>AT3G24050.1 | chr3:8686060-8687462 FORWARD LENGTH=275
Length = 274
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Query: 214 KCQNCGTSEKMTPAMRRGPAGPRTLCNACGLMW 246
KCQ+CG + TP R GPAGP+TLCNACG+ +
Sbjct: 195 KCQHCGAEK--TPQWRAGPAGPKTLCNACGVRY 225
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,417,717
Number of extensions: 219572
Number of successful extensions: 542
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 18
Length of query: 319
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,392,385
Effective search space: 1846324700
Effective search space used: 1846324700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)