Os02g0148500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TIMING OF CAB 1 (Fragment).
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Os02g0148500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TIMING OF CAB 1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.11 | 0.134 | 13.1 | 0.536 | 0.366 | -0.34 | 0.235 | 0.427 | 0.179 | 17.6 | 20.32 | 1253 | -- | -- |
| 8.27 | 0.134 | 13.1 | 0.453 | 0.37 | -0.341 | 0.2 | -- | 0.159 | 17.5 | 18.52 | 1193 | -- | -- |
| 8.23 | 0.134 | 13.1 | 0.54 | 0.37 | -0.343 | -- | 0.451 | 0.182 | 17.6 | 20.65 | 1203 | -- | -- |
| 8.34 | 0.135 | 13.1 | 0.424 | 0.372 | -0.353 | -- | -- | 0.149 | 17.7 | 18.22 | 1163 | -- | -- |
| 15.16 | 0.181 | 13.1 | 0.541 | -- | -0.379 | -- | 0.458 | 0.182 | -- | 21.78 | 1275 | -- | -- |
| 11.16 | 0.157 | 13.1 | 0.303 | 0.39 | -- | 0.217 | -- | 0.0741 | 17.2 | -- | -- | -- | -- |
| 11.28 | 0.157 | 13.1 | 0.303 | 0.392 | -- | -- | -- | 0.0751 | 17.2 | -- | -- | -- | -- |
| 15.29 | 0.182 | 13.1 | 0.423 | -- | -0.368 | -- | -- | 0.149 | -- | 19.74 | 1272 | -- | -- |
| 12.37 | 0.164 | 13.1 | -- | 0.367 | -0.19 | -- | -- | 0.0847 | 17.3 | 21.9 | 1296 | -- | -- |
| 19.3 | 0.205 | 13.1 | 0.289 | -- | -- | -- | -- | 0.0653 | -- | -- | -- | -- | -- |
| 13.7 | 0.173 | 13.1 | -- | 0.386 | -- | -- | -- | 0.0414 | 17.2 | -- | -- | -- | -- |
| 19.28 | 0.205 | 13.1 | -- | -- | -0.239 | -- | -- | 0.0647 | -- | 23.9 | 1286 | -- | -- |
| 21.51 | 0.216 | 13.1 | -- | -- | -- | -- | -- | 0.0332 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 4 | 8.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 8 |
| 25 | 8.06 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 36 | 8.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 40 | 8.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 62 | 8.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 187 | 8.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 202 | 8.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 217 | 8.15 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 226 | 8.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 264 | 8.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 402 | 8.19 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 491 | 8.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 492 | 8.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 497 | 8.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 612 | 8.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 20 |
| 681 | 8.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 813 | 8.26 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 876 | 8.27 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 964 | 8.28 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |