BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0148500 Os02g0148500|AK068931
(328 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51600.1 | chr1:19133176-19135252 FORWARD LENGTH=303 218 3e-57
AT3G21175.1 | chr3:7422832-7424598 FORWARD LENGTH=298 215 2e-56
AT4G24470.3 | chr4:12645785-12647734 FORWARD LENGTH=318 173 1e-43
AT2G46790.1 | chr2:19232874-19234901 FORWARD LENGTH=469 51 1e-06
AT2G46670.1 | chr2:19164589-19165233 REVERSE LENGTH=184 50 1e-06
AT5G02810.1 | chr5:638283-641461 REVERSE LENGTH=728 50 2e-06
AT5G47140.1 | chr5:19145108-19147303 FORWARD LENGTH=471 49 5e-06
>AT1G51600.1 | chr1:19133176-19135252 FORWARD LENGTH=303
Length = 302
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/203 (56%), Positives = 134/203 (66%), Gaps = 12/203 (5%)
Query: 105 NTLTLSFQGEVYVFESVSAERVQAVLLLLGGRELXXX---------XXXXXXXXXXXXKK 155
+ LTLSFQG+VYVF+SV E+VQAVLLLLGGREL ++
Sbjct: 82 DQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPGTPQR 141
Query: 156 MNFPHRMASLMRFREKRKERNFDKKIRYTVRKEVALRMQRNRGQFTSSKSKAEEATSVIT 215
+ P R+ASL+RFREKRK RNFDKKIRYTVRKEVALRMQRN+GQFTS+KS +EA S +
Sbjct: 142 FSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGS 201
Query: 216 SSEGSPNWGAVEGRPPSAAE--CHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTM 273
S + W A+E E C HCGI STPMMRRGP GPRTLCNACGLMWANKG
Sbjct: 202 SWGSNQTW-AIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAF 260
Query: 274 REVTKGPPVPLQIVPAATNDVQN 296
R+++K P Q +P N+ N
Sbjct: 261 RDLSKASPQTAQNLPLNKNEDAN 283
>AT3G21175.1 | chr3:7422832-7424598 FORWARD LENGTH=298
Length = 297
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/188 (57%), Positives = 132/188 (70%), Gaps = 12/188 (6%)
Query: 105 NTLTLSFQGEVYVFESVSAERVQAVLLLLGGRELXXXXXXXXXXXXXXXK---------K 155
+ LTLSFQG+VYVF+ VS E+VQAVLLLLGGRE+ + +
Sbjct: 78 DQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQR 137
Query: 156 MNFPHRMASLMRFREKRKERNFDKKIRYTVRKEVALRMQRNRGQFTSSKSKAEEATSVIT 215
++ P R+ASL+RFREKRK RNFDK IRYTVRKEVALRMQR +GQFTS+KS +++ S +
Sbjct: 138 LSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGS 197
Query: 216 SSEGSPNWGAVEGRPPSAAE--CHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTM 273
+ +W AVEG E C HCG S STPMMRRGPDGPRTLCNACGLMWANKGT+
Sbjct: 198 DWGSNQSW-AVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTL 256
Query: 274 REVTKGPP 281
R+++K PP
Sbjct: 257 RDLSKVPP 264
>AT4G24470.3 | chr4:12645785-12647734 FORWARD LENGTH=318
Length = 317
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 136/250 (54%), Gaps = 41/250 (16%)
Query: 100 PHVASNTLTLSFQGEVYVFESVSAERVQAVLLLLGG--------RELXXXXXXXXXXXXX 151
P +N LT+SF+G+VYVF++V A++V AVL LLGG + +
Sbjct: 77 PPEGANQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVE 136
Query: 152 XXKKMNFPHRMASLMRFREKRKERNFDKKIRYTVRKEVALRMQRNRGQFTSSKSKAEEAT 211
+ + P R SL RFR+KR R F+KK+RY VR+EVALRM RN+GQFTSSK
Sbjct: 137 YQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKM------ 190
Query: 212 SVITSSEGSPNWGAVEGRPPSAAE----CHHCGISAASTPMMRRGPDGPRTLCNACGLMW 267
++G+ N G + A C HCGIS+ TPMMRRGP GPRTLCNACGL W
Sbjct: 191 -----TDGAYNSGTDQDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFW 245
Query: 268 ANKGTMREVTK----------GPPVPLQIVP---AATNDVQNGI-VEATGVEQHNSAVEE 313
AN+GT+R+++K P + P + D N + EA VE+H S
Sbjct: 246 ANRGTLRDLSKKTEENQLALMKPVSSYKYHPDDGGSVADAANNLNTEAASVEEHTS---- 301
Query: 314 AVSAANGHES 323
VS ANG S
Sbjct: 302 MVSLANGDNS 311
>AT2G46790.1 | chr2:19232874-19234901 FORWARD LENGTH=469
Length = 468
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 160 HRMASLMRFREKRKERNFDKKIRYTVRKEVALRMQRNRGQF 200
R A+LM+FR KRK+R FDKK+RY RK++A + R +GQF
Sbjct: 416 QREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQF 456
>AT2G46670.1 | chr2:19164589-19165233 REVERSE LENGTH=184
Length = 183
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 160 HRMASLMRFREKRKERNFDKKIRYTVRKEVALRMQRNRGQF 200
R A+LM+FR KRK+R FDKK+RY RK++A + R +GQF
Sbjct: 131 QREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQF 171
>AT5G02810.1 | chr5:638283-641461 REVERSE LENGTH=728
Length = 727
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 158 FPHRMASLMRFREKRKERNFDKKIRYTVRKEVALRMQRNRGQFTSSKSKAEEATSV 213
R A+L +FR+KRKER F KK+RY RK++A + R RGQF + A + +
Sbjct: 666 ISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTAAATDDNDI 721
>AT5G47140.1 | chr5:19145108-19147303 FORWARD LENGTH=471
Length = 470
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 236 CHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTMREVT 277
C+HCG++ STP+ R GP LCNACG W KG++ T
Sbjct: 7 CYHCGVT--STPLWRNGPPEKPVLCNACGSRWRTKGSLVNYT 46
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.128 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,145,442
Number of extensions: 179017
Number of successful extensions: 479
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 9
Length of query: 328
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,392,385
Effective search space: 1921856165
Effective search space used: 1921856165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)