BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0734100 Os03g0734100|AK119903
         (82 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0734100  Conserved hypothetical protein                      134   1e-32
Os03g0734200  Hypothetical protein                                 68   1e-12
Os03g0734000  Pentatricopeptide repeat containing protein          65   1e-11

>Os03g0734100 Conserved hypothetical protein
          Length = 82

 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/82 (79%), Positives = 65/82 (79%)

Query: 1  MASMKXXXXXXXXXXXXXXXXXMGGAEEARCSVVCIQGGYITCDNYPYQKLDGCACECAP 60
          MASMK                 MGGAEEARCSVVCIQGGYITCDNYPYQKLDGCACECAP
Sbjct: 1  MASMKLSLAVVFLLSAVVVMSAMGGAEEARCSVVCIQGGYITCDNYPYQKLDGCACECAP 60

Query: 61 KDGQNCVLHLEHGPPSNCPPQA 82
          KDGQNCVLHLEHGPPSNCPPQA
Sbjct: 61 KDGQNCVLHLEHGPPSNCPPQA 82



>Os03g0734200 Hypothetical protein
          Length = 92

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 34/47 (72%)

Query: 32 SVVCIQGGYITCDNYPYQKLDGCACECAPKDGQNCVLHLEHGPPSNC 78
          +V CIQGGYITC NYP +KLDGC C CAP DG+ CVLHL  G    C
Sbjct: 42 TVRCIQGGYITCKNYPGKKLDGCVCLCAPTDGERCVLHLHDGSSYKC 88



>Os03g0734000 Pentatricopeptide repeat containing protein
          Length = 77

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 36/51 (70%)

Query: 28 EARCSVVCIQGGYITCDNYPYQKLDGCACECAPKDGQNCVLHLEHGPPSNC 78
          EA C++ C +G YITC N+PY++L GCAC CAP DG +CV+HL  G    C
Sbjct: 27 EAVCTLFCAKGTYITCSNHPYEQLYGCACRCAPPDGVDCVVHLADGSTQQC 77



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,253,900
Number of extensions: 117710
Number of successful extensions: 164
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 4
Length of query: 82
Length of database: 17,035,801
Length adjustment: 52
Effective length of query: 30
Effective length of database: 14,320,673
Effective search space: 429620190
Effective search space used: 429620190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)