Os03g0734000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pentatricopeptide repeat containing protein.
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Os03g0734000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pentatricopeptide repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.96 | 0.504 | 3.22 | -0.293 | 0.154 | 0.165 | -0.301 | -3.61 | 0.00333 | 7.93 | 52.41 | 3107 | -- | -- |
| 116.66 | 0.503 | 3.22 | 0.0784 | 0.166 | 1.32 | -0.456 | -- | 0.0508 | 8.23 | 66.55 | 1991 | -- | -- |
| 115.16 | 0.504 | 3.22 | -0.202 | 0.122 | 0.883 | -- | -3.1 | 0.0151 | 7.01 | 52.41 | 3107 | -- | -- |
| 117.04 | 0.504 | 3.22 | 0.0624 | 0.178 | 1.37 | -- | -- | 0.0757 | 8.02 | 66.77 | 1860 | -- | -- |
| 115.94 | 0.504 | 3.22 | -0.198 | -- | 0.908 | -- | -3.1 | 0.0182 | -- | 52.41 | 3107 | -- | -- |
| 127.72 | 0.53 | 3.24 | -0.286 | 0.168 | -- | -0.436 | -- | -0.0358 | 9.28 | -- | -- | -- | -- |
| 128.4 | 0.531 | 3.24 | -0.302 | 0.171 | -- | -- | -- | -0.0365 | 9.09 | -- | -- | -- | -- |
| 118.24 | 0.506 | 3.22 | 0.0336 | -- | 1.37 | -- | -- | 0.0627 | -- | 66.08 | 1815 | -- | -- |
| 116.99 | 0.504 | 3.22 | -- | 0.155 | 1.34 | -- | -- | 0.0546 | 8.12 | 66.07 | 1796 | -- | -- |
| 130.08 | 0.533 | 3.25 | -0.303 | -- | -- | -- | -- | -0.0355 | -- | -- | -- | -- | -- |
| 130.81 | 0.535 | 3.23 | -- | 0.171 | -- | -- | -- | -0.00282 | 9.23 | -- | -- | -- | -- |
| 118.26 | 0.506 | 3.22 | -- | -- | 1.34 | -- | -- | 0.0578 | -- | 66.07 | 1813 | -- | -- |
| 132.5 | 0.537 | 3.24 | -- | -- | -- | -- | -- | -0.00194 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.17 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 8 | 114.18 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 40 | 114.33 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 10 | 3 |
| 88 | 114.41 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 0 | NA |
| 470 | 114.90 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 471 | 114.90 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 496 | 115.33 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 498 | 115.36 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 501 | 115.47 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 574 | 115.67 | atmosphere | 1010 | 10 | < th | dose independent | sin | 22 | NA |
| 575 | 115.69 | atmosphere | 1010 | 10 | > th | dose independent | sin | 23 | NA |
| 577 | 115.70 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 604 | 115.84 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 9 | 4 |
| 770 | 116.62 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 780 | 116.62 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 958 | 116.97 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 6 | 16 |
| 962 | 117.12 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 974 | 117.20 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 23 | 23 |
| 976 | 117.23 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 12 | 1 |