BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0734000 Os03g0734000|AK064264
         (77 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0734000  Pentatricopeptide repeat containing protein         158   7e-40
Os03g0734100  Conserved hypothetical protein                       82   9e-17
Os03g0733900  Conserved hypothetical protein                       78   2e-15

>Os03g0734000 Pentatricopeptide repeat containing protein
          Length = 77

 Score =  158 bits (400), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1  MASIKLSLACVLLISGLVMLERIEHTEAVCTLFCAKGTYITCSNHPYEQLYGCACRCAPP 60
          MASIKLSLACVLLISGLVMLERIEHTEAVCTLFCAKGTYITCSNHPYEQLYGCACRCAPP
Sbjct: 1  MASIKLSLACVLLISGLVMLERIEHTEAVCTLFCAKGTYITCSNHPYEQLYGCACRCAPP 60

Query: 61 DGVDCVVHLADGSTQQC 77
          DGVDCVVHLADGSTQQC
Sbjct: 61 DGVDCVVHLADGSTQQC 77



>Os03g0734100 Conserved hypothetical protein
          Length = 82

 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 1  MASIKLSLACVLLISGLVMLERIEHTE-AVCTLFCAKGTYITCSNHPYEQLYGCACRCAP 59
          MAS+KLSLA V L+S +V++  +   E A C++ C +G YITC N+PY++L GCAC CAP
Sbjct: 1  MASMKLSLAVVFLLSAVVVMSAMGGAEEARCSVVCIQGGYITCDNYPYQKLDGCACECAP 60

Query: 60 PDGVDCVVHLADGSTQQC 77
           DG +CV+HL  G    C
Sbjct: 61 KDGQNCVLHLEHGPPSNC 78



>Os03g0733900 Conserved hypothetical protein
          Length = 62

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 38/48 (79%)

Query: 30 CTLFCAKGTYITCSNHPYEQLYGCACRCAPPDGVDCVVHLADGSTQQC 77
          C + CA+GTYITC N P E LYGCAC+CAPP G DCVVH ADGST +C
Sbjct: 15 CNMLCARGTYITCCNRPGEALYGCACKCAPPGGKDCVVHYADGSTSKC 62



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.138    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,840,602
Number of extensions: 90720
Number of successful extensions: 229
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 4
Length of query: 77
Length of database: 17,035,801
Length adjustment: 48
Effective length of query: 29
Effective length of database: 14,529,529
Effective search space: 421356341
Effective search space used: 421356341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)