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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0734100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.8 (0.0638) R2 : 0.48
β1 : -3.38 (0.233) R2dD : 0.252 R2D : 0.257
β2 : 0.798 (0.167) R2dC : 0.0264 R2C : 0.0352
β3 : 3.53 (0.28) R2dE : 0.183 R2E : 0.199
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0683 (0.136) R2dN8 : 0.000412 R2N8 : 0.00457
σ : 1.19
deviance : 655.3
__
_____
C
peak time of C : 6.24
E
wheather : wind
threshold : 3.508
memory length : 3316
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.0496
open length of G : 4.69

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
651.41 1.2 4.84 -3.38 0.783 3.47 -0.694 -1.67 -0.152 5.98 3.202 3315 0.133 4.65
653.92 1.19 4.82 -3.43 0.815 3.54 -0.978 -- 0.00553 5.88 3.434 3316 0.058 4.67
651.83 1.19 4.83 -3.36 0.754 3.5 -- -1.79 -0.13 6.11 3.224 3315 0.0652 4.73
655.3 1.19 4.8 -3.38 0.798 3.53 -- -- 0.0683 6.24 3.508 3316 0.0496 4.69
682.41 1.22 4.86 -3.3 -- 3.62 -- -1.95 -0.163 -- 3.145 3359 0.0127 4.73
881.65 1.39 4.77 -3.4 0.967 -- -0.986 -- 0.168 6 -- -- -- --
883.59 1.39 4.77 -3.4 0.965 -- -- -- 0.173 6.33 -- -- -- --
687.55 1.22 4.86 -3.38 -- 3.71 -- -- -0.108 -- 3.238 3359 0.0047 4.7
954.16 1.44 4.73 -- 0.744 3.64 -- -- 0.423 6.17 3.544 4623 0.0666 4.55
931.98 1.43 4.78 -3.38 -- -- -- -- 0.194 -- -- -- -- --
1188.98 1.61 4.68 -- 0.92 -- -- -- 0.552 6.53 -- -- -- --
925.01 1.42 4.7 -- -- 3.54 -- -- 1.03 -- 3.662 16457 0.499 4.31
1233.05 1.64 4.7 -- -- -- -- -- 0.568 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 641.69 humidity 80 14400 > th dose dependent rect. 1 1
4 654.43 humidity 90 14400 > th dose independent rect. 24 3
5 654.90 wind 5 4320 < th dose independent rect. 24 5
6 654.94 wind 5 4320 > th dose independent rect. 24 5
7 655.61 radiation 1 14400 < th dose dependent rect. 18 11
11 658.50 humidity 90 14400 > th dose dependent rect. 23 8
12 658.57 humidity 50 14400 > th dose dependent rect. 1 1
16 658.98 radiation 1 14400 < th dose dependent rect. 18 1
20 659.30 wind 3 4320 > th dose dependent rect. 24 4
22 659.60 humidity 90 14400 > th dose independent rect. 23 5
25 659.64 radiation 1 14400 < th dose dependent rect. 18 7
31 660.48 humidity 90 14400 > th dose dependent rect. 3 4
55 664.39 wind 5 14400 < th dose independent rect. 1 1
57 664.69 wind 7 4320 > th dose dependent rect. 22 5
63 665.30 wind 5 4320 > th dose dependent rect. 1 1
78 666.33 radiation 1 14400 < th dose independent rect. 18 1
79 666.33 radiation 1 14400 < th dose independent rect. 18 8
84 666.63 radiation 1 14400 < th dose independent rect. 18 10
93 667.11 wind 5 14400 > th dose independent rect. 1 1
95 667.23 wind 7 4320 > th dose dependent rect. 21 7
106 668.08 humidity 90 14400 < th dose independent rect. 21 8
109 668.20 humidity 90 14400 > th dose dependent rect. 4 2
130 669.30 humidity 90 14400 < th dose independent rect. 1 1
161 671.23 humidity 90 14400 < th dose independent rect. 23 4
169 671.66 wind 1 14400 > th dose independent rect. 2 3
182 672.32 wind 5 4320 > th dose independent sin 10 NA
185 672.44 radiation 1 43200 < th dose dependent rect. 23 6
194 672.94 wind 5 4320 > th dose independent rect. 18 15
209 673.68 wind 5 4320 < th dose independent sin 10 NA
215 673.81 wind 5 4320 > th dose dependent rect. 21 12
222 674.15 wind 5 4320 > th dose dependent sin 10 NA
225 674.30 wind 9 4320 < th dose dependent rect. 23 6
229 674.54 radiation 1 4320 < th dose dependent rect. 18 15
244 675.26 wind 1 14400 < th dose independent rect. 2 3
245 675.35 wind 5 4320 < th dose independent rect. 18 15
274 676.51 temperature 20 14400 < th dose dependent rect. 6 12
293 676.91 wind 9 4320 > th dose dependent rect. 17 6
294 676.92 temperature 20 14400 < th dose dependent rect. 5 15
295 676.93 humidity 50 14400 > th dose dependent rect. 24 4
301 677.09 wind 5 4320 > th dose dependent rect. 17 16
307 677.20 wind 9 4320 > th dose dependent rect. 17 9
325 677.71 temperature 20 14400 < th dose dependent rect. 6 7
341 678.07 radiation 1 43200 < th dose dependent rect. 3 2
352 678.40 wind 7 4320 > th dose independent rect. 4 1
357 678.43 temperature 20 14400 < th dose dependent sin 23 NA
366 678.67 wind 5 4320 > th dose dependent rect. 4 1
384 678.91 radiation 1 4320 < th dose dependent rect. 18 18
388 678.94 wind 9 4320 > th dose independent rect. 18 4
391 679.03 wind 7 4320 > th dose dependent rect. 4 4
505 681.28 wind 1 4320 > th dose dependent rect. 18 12
529 681.92 temperature 20 14400 < th dose independent rect. 5 13
532 682.01 wind 7 4320 > th dose independent rect. 3 5
537 682.16 radiation 1 4320 < th dose dependent sin 10 NA
556 682.48 wind 9 4320 < th dose independent rect. 17 9
560 682.53 wind 7 4320 > th dose dependent rect. 7 1
582 682.88 temperature 20 14400 > th dose independent rect. 4 14
630 683.42 wind 9 4320 > th dose independent rect. 17 9
642 683.63 wind 9 4320 < th dose independent rect. 17 6
653 683.78 wind 7 4320 < th dose independent rect. 19 1
654 683.78 wind 9 4320 > th dose independent rect. 17 6
678 684.07 wind 7 4320 < th dose independent rect. 16 18
703 684.67 wind 7 4320 > th dose dependent rect. 7 3
711 684.97 wind 9 4320 < th dose dependent rect. 18 12
766 685.95 radiation 10 4320 > th dose independent rect. 17 1
801 686.30 temperature 20 14400 < th dose independent sin 1 NA
819 686.59 temperature 20 14400 < th dose dependent rect. 9 2
903 687.77 temperature 20 14400 > th dose independent sin 2 NA