BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0724600 Os03g0724600|AK063718
         (110 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0724600  Conserved hypothetical protein                      172   5e-44
Os03g0745500  Hypothetical protein                                 83   4e-17
Os03g0716400                                                       76   6e-15
Os03g0151500  Conserved hypothetical protein                       68   1e-12

>Os03g0724600 Conserved hypothetical protein
          Length = 110

 Score =  172 bits (436), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 26  KVACFKKTAGEEADATFMERVKDYYNQLKESSAEKHWICIKDKFRAAGEYVSQKSSSVFG 85
           KVACFKKTAGEEADATFMERVKDYYNQLKESSAEKHWICIKDKFRAAGEYVSQKSSSVFG
Sbjct: 26  KVACFKKTAGEEADATFMERVKDYYNQLKESSAEKHWICIKDKFRAAGEYVSQKSSSVFG 85

Query: 86  KKKVEPVVKDAAVPGEASSVTVESQ 110
           KKKVEPVVKDAAVPGEASSVTVESQ
Sbjct: 86  KKKVEPVVKDAAVPGEASSVTVESQ 110



>Os03g0745500 Hypothetical protein
          Length = 70

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 43/49 (87%)

Query: 54  KESSAEKHWICIKDKFRAAGEYVSQKSSSVFGKKKVEPVVKDAAVPGEA 102
           + +   KHWICI+DKFRAAG+YVSQKSSSVFGKKKVEP+VKDAA PG+ 
Sbjct: 20  RRTPPRKHWICIEDKFRAAGDYVSQKSSSVFGKKKVEPMVKDAAAPGKG 68



>Os03g0716400 
          Length = 294

 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 41/44 (93%), Gaps = 1/44 (2%)

Query: 67  DKFR-AAGEYVSQKSSSVFGKKKVEPVVKDAAVPGEASSVTVES 109
           DK R AAGE+VSQKSSSVFGKKKVEPVVKDAAVPGE SSVTVES
Sbjct: 250 DKLRTAAGEFVSQKSSSVFGKKKVEPVVKDAAVPGETSSVTVES 293



>Os03g0151500 Conserved hypothetical protein
          Length = 102

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 9/72 (12%)

Query: 27 VACFKKTAGEEADATFMERVKDYYNQLKESSAEKHWICIKDKFRAAGEYVSQKSS---SV 83
          +AC+++T GEEA  TF ER KD + Q K++ A  HW+C+K+K RAAGEY + ++    ++
Sbjct: 21 MACYRRTVGEEA--TFKERSKDLFRQFKDAPAGDHWVCLKNKVRAAGEYATLRTRQGITM 78

Query: 84 FGKKKVEPVVKD 95
          FG    EP V D
Sbjct: 79 FG----EPNVGD 86



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.123    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,407,142
Number of extensions: 73043
Number of successful extensions: 188
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 4
Length of query: 110
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 33
Effective length of database: 13,015,323
Effective search space: 429505659
Effective search space used: 429505659
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)