Os03g0716400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0716400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.39 | 0.713 | 7.35 | 1.6 | 1.07 | -2.81 | 0.653 | 1.14 | 0.00199 | 11.1 | 16.94 | 2578 | -- | -- |
| 231.31 | 0.708 | 7.39 | 1.34 | 1.06 | -2.96 | 0.573 | -- | -0.0715 | 11.1 | 15.48 | 2566 | -- | -- |
| 232.09 | 0.71 | 7.36 | 1.56 | 1.06 | -2.86 | -- | 0.863 | -0.0121 | 11.1 | 16.6 | 2555 | -- | -- |
| 232.78 | 0.711 | 7.39 | 1.35 | 1.05 | -2.97 | -- | -- | -0.0698 | 11.1 | 15.7 | 2554 | -- | -- |
| 293.97 | 0.799 | 7.37 | 1.67 | -- | -3.19 | -- | 1.03 | 0.0721 | -- | 17.01 | 2389 | -- | -- |
| 411.04 | 0.95 | 7.53 | 0.156 | 1.37 | -- | 0.722 | -- | -0.692 | 11.6 | -- | -- | -- | -- |
| 413.3 | 0.952 | 7.53 | 0.186 | 1.36 | -- | -- | -- | -0.69 | 11.6 | -- | -- | -- | -- |
| 294.63 | 0.799 | 7.4 | 1.41 | -- | -3.25 | -- | -- | -0.00766 | -- | 16.3 | 2389 | -- | -- |
| 269.91 | 0.765 | 7.45 | -- | 1.02 | -2.1 | -- | -- | -0.376 | 11.1 | 20.04 | 2497 | -- | -- |
| 529.99 | 1.08 | 7.56 | 0.148 | -- | -- | -- | -- | -0.705 | -- | -- | -- | -- | -- |
| 414.21 | 0.952 | 7.53 | -- | 1.36 | -- | -- | -- | -0.71 | 11.5 | -- | -- | -- | -- |
| 335.42 | 0.853 | 7.46 | -- | -- | -2.42 | -- | -- | -0.27 | -- | 20.7 | 2394 | -- | -- |
| 530.57 | 1.08 | 7.56 | -- | -- | -- | -- | -- | -0.721 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 221.06 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 2 | 222.72 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 223.30 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 22 | 223.34 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 27 | 223.52 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 34 | 225.09 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 35 | 225.09 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 9 |
| 43 | 225.49 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 46 | 225.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 47 | 225.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 51 | 226.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 10 |
| 57 | 226.58 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 83 | 227.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 11 |
| 135 | 228.23 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 147 | 228.50 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 149 | 228.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 151 | 228.53 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 163 | 228.77 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 168 | 228.91 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 170 | 228.95 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 172 | 228.95 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 177 | 229.02 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 180 | 229.03 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 182 | 229.10 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 187 | 229.26 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 196 | 229.43 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 201 | 229.51 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 206 | 229.64 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 209 | 229.69 | radiation | 1.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 234 | 230.27 | radiation | 1.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 382 | 231.07 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 397 | 231.27 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 408 | 231.44 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 413 | 231.49 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 415 | 231.52 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 438 | 231.69 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 22 | 13 |
| 446 | 231.80 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 452 | 231.84 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 474 | 231.96 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 477 | 231.98 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 481 | 232.01 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 15 |
| 484 | 232.02 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 495 | 232.10 | temperature | 20.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 497 | 232.10 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 525 | 232.29 | temperature | 20.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 534 | 232.32 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 8 | 18 |
| 562 | 232.42 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 22 | 12 |
| 577 | 232.48 | temperature | 20.0 | 43200 | > th | dose independent | sin | 20 | NA |
| 580 | 232.48 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 634 | 232.70 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 639 | 232.72 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 745 | 232.93 | temperature | 15.0 | 1440 | > th | dose dependent | sin | 8 | NA |
| 801 | 233.08 | temperature | 20.0 | 43200 | < th | dose independent | sin | 19 | NA |
| 842 | 233.24 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 19 | 15 |
| 850 | 233.27 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 868 | 233.35 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 987 | 233.72 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 15 | 16 |