BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0716400 Os03g0716400|Os03g0716400
         (294 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0716400                                                      455   e-128
Os03g0724600  Conserved hypothetical protein                       75   5e-14

>Os03g0716400 
          Length = 294

 Score =  455 bits (1171), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/294 (80%), Positives = 237/294 (80%)

Query: 1   MADTTLRPSGDAAKKIADALRKTRGVFSNAYRTVRIRVKGTKVEEILDKLEKLLNLYKIV 60
           MADTTLRPSGDAAKKIADALRKTRGVFSNAYRTVRIRVKGTKVEEILDKLEKLLNLYKIV
Sbjct: 1   MADTTLRPSGDAAKKIADALRKTRGVFSNAYRTVRIRVKGTKVEEILDKLEKLLNLYKIV 60

Query: 61  HSDTSDSTRTQNRAGHPRLPARHPSVRPKLVFVFNGRALKLWIERLRLKLASYATPSKRM 120
           HSDTSDSTRTQNRAGHPRLPARHPSVRPKLVFVFNGRALKLWIERLRLKLASYATPSKRM
Sbjct: 61  HSDTSDSTRTQNRAGHPRLPARHPSVRPKLVFVFNGRALKLWIERLRLKLASYATPSKRM 120

Query: 121 FLIVSAGVAVSVFALYAVHCNYRGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           FLIVSAGVAVSVFALYAVHCNYRGRL                                  
Sbjct: 121 FLIVSAGVAVSVFALYAVHCNYRGRLGGGGGGGGGGGGGDVGGDGGGGGDGNVGGGGGGG 180

Query: 181 XXXXXXXXXXXXXXXXARDDDAPKGLRLILVAAPSSMPWPRYLAVKNSGEKLVPRQDXXX 240
                           ARDDDAPKGLRLILVAAPSSMPWPRYLAVKNSGEKLVPRQD   
Sbjct: 181 GGGGGGGGGGGGGDGVARDDDAPKGLRLILVAAPSSMPWPRYLAVKNSGEKLVPRQDGGG 240

Query: 241 XXXXDQVKIDKLRTAAGEFVSQKSSSVFGKKKVEPVVKDAAVPGETSSVTVESL 294
               DQVKIDKLRTAAGEFVSQKSSSVFGKKKVEPVVKDAAVPGETSSVTVESL
Sbjct: 241 GGGGDQVKIDKLRTAAGEFVSQKSSSVFGKKKVEPVVKDAAVPGETSSVTVESL 294



>Os03g0724600 Conserved hypothetical protein
          Length = 110

 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 41/44 (93%), Gaps = 1/44 (2%)

Query: 250 DKLRTAAGEFVSQKSSSVFGKKKVEPVVKDAAVPGETSSVTVES 293
           DK R AAGE+VSQKSSSVFGKKKVEPVVKDAAVPGE SSVTVES
Sbjct: 67  DKFR-AAGEYVSQKSSSVFGKKKVEPVVKDAAVPGEASSVTVES 109



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,450,970
Number of extensions: 259169
Number of successful extensions: 604
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 3
Length of query: 294
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 194
Effective length of database: 11,814,401
Effective search space: 2291993794
Effective search space used: 2291993794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)