Os03g0724600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0724600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.51 | 0.667 | 4.91 | 2.83 | 1.35 | -2.19 | 0.849 | 1.28 | 0.585 | 11.9 | 15 | 24241 | -- | -- |
| 201.9 | 0.662 | 4.94 | 3.5 | 1.34 | -2.94 | 0.789 | -- | 0.733 | 11.9 | 9.158 | 41398 | -- | -- |
| 204.45 | 0.666 | 4.91 | 2.89 | 1.36 | -2.18 | -- | 1.43 | 0.605 | 11.9 | 14.36 | 24157 | -- | -- |
| 204.65 | 0.666 | 4.94 | 3.5 | 1.33 | -2.94 | -- | -- | 0.736 | 11.9 | 9.053 | 41390 | -- | -- |
| 315.53 | 0.827 | 4.97 | 2.93 | -- | -2.58 | -- | 0.585 | 0.607 | -- | 12.4 | 24003 | -- | -- |
| 294.48 | 0.804 | 5.2 | 0.477 | 1.43 | -- | 0.954 | -- | -0.413 | 12 | -- | -- | -- | -- |
| 298.43 | 0.809 | 5.19 | 0.515 | 1.42 | -- | -- | -- | -0.409 | 12 | -- | -- | -- | -- |
| 315.79 | 0.828 | 5 | 2.83 | -- | -2.66 | -- | -- | 0.571 | -- | 8.995 | 24025 | -- | -- |
| 252.98 | 0.741 | 5.18 | -- | 1.27 | -1.3 | -- | -- | -0.247 | 11.7 | 21.68 | 2729 | -- | -- |
| 425.95 | 0.964 | 5.23 | 0.471 | -- | -- | -- | -- | -0.428 | -- | -- | -- | -- | -- |
| 305.43 | 0.818 | 5.21 | -- | 1.42 | -- | -- | -- | -0.466 | 12 | -- | -- | -- | -- |
| 341.24 | 0.86 | 5.18 | -- | -- | -1.56 | -- | -- | -0.219 | -- | 22.3 | 2448 | -- | -- |
| 431.81 | 0.97 | 5.24 | -- | -- | -- | -- | -- | -0.481 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 190.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 2 | 190.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 3 | 190.30 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 4 | 190.30 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 7 | 190.58 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 11 | 190.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 12 | 190.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 9 |
| 39 | 191.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 102 | 192.48 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 109 | 192.77 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 119 | 192.81 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 137 | 192.94 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 140 | 192.95 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 202 | 194.66 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 270 | 195.64 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 271 | 195.65 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 280 | 195.92 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 298 | 196.20 | radiation | 1.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 302 | 196.25 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 310 | 196.39 | radiation | 1.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 321 | 196.40 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 370 | 196.73 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 399 | 196.77 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 15 |
| 429 | 196.85 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 433 | 196.88 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 440 | 196.90 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 442 | 196.91 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 15 |
| 458 | 197.06 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 14 |
| 473 | 197.14 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 478 | 197.15 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 19 |
| 480 | 197.16 | temperature | 20.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 482 | 197.17 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 484 | 197.17 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 17 |
| 491 | 197.19 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 502 | 197.19 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 6 | NA |
| 503 | 197.19 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 510 | 197.23 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 512 | 197.24 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 513 | 197.24 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 2 | 14 |
| 529 | 197.29 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 538 | 197.31 | temperature | 20.0 | 43200 | < th | dose independent | sin | 0 | NA |
| 597 | 197.44 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 6 | NA |
| 607 | 197.46 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 6 | NA |
| 610 | 197.46 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 6 | NA |
| 625 | 197.51 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 636 | 197.54 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 767 | 197.96 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 773 | 197.97 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 8 | 17 |
| 785 | 197.99 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 793 | 198.02 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 856 | 198.14 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 867 | 198.17 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 0 | NA |
| 920 | 198.30 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 8 |