BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0717700 Os03g0717700|AK060709
(250 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0717700 Response regulator receiver domain containing ... 459 e-130
Os01g0923700 Similar to Histidine kinase-like protein 201 3e-52
Os06g0654300 Histidine kinase, homodimeric domain containin... 99 4e-21
AF497627 93 2e-19
AK110426 72 4e-13
>Os03g0717700 Response regulator receiver domain containing protein
Length = 250
Score = 459 bits (1182), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/250 (91%), Positives = 228/250 (91%)
Query: 1 MLLIESDSWGPQMDVSLHARLQEMKQSDRIHVLPKVFLLSAAESDKVKKIHAVDSVIPKP 60
MLLIESDSWGPQMDVSLHARLQEMKQSDRIHVLPKVFLLSAAESDKVKKIHAVDSVIPKP
Sbjct: 1 MLLIESDSWGPQMDVSLHARLQEMKQSDRIHVLPKVFLLSAAESDKVKKIHAVDSVIPKP 60
Query: 61 LKASALAACLFQALGITQPSHEKXXXXXXXXXXXXXXXXXXXXXXKNILVVDDNKVNLRV 120
LKASALAACLFQALGITQPSHEK KNILVVDDNKVNLRV
Sbjct: 61 LKASALAACLFQALGITQPSHEKRDDSGSLHGRDGSGSLHGLLLGKNILVVDDNKVNLRV 120
Query: 121 AAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMDGFEATRQIRAMEGKAN 180
AAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMDGFEATRQIRAMEGKAN
Sbjct: 121 AAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMDGFEATRQIRAMEGKAN 180
Query: 181 EQADDSESGSEIAAKTAKWHLPILAMTADVIQATHEECTKCGMDGYVSKPFEEKQLFQAV 240
EQADDSESGSEIAAKTAKWHLPILAMTADVIQATHEECTKCGMDGYVSKPFEEKQLFQAV
Sbjct: 181 EQADDSESGSEIAAKTAKWHLPILAMTADVIQATHEECTKCGMDGYVSKPFEEKQLFQAV 240
Query: 241 QKFLGPCVSS 250
QKFLGPCVSS
Sbjct: 241 QKFLGPCVSS 250
>Os01g0923700 Similar to Histidine kinase-like protein
Length = 866
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 153/251 (60%), Gaps = 20/251 (7%)
Query: 1 MLLIESDSWGPQMDVS--LHARLQEMKQSDRIHVLPKVFLL-SAAESDK----VKKIHAV 53
++LI+ ++W + + L +L+ + D PK+FLL S+A S K + H +
Sbjct: 622 LVLIDKETWLKESHCTPLLVNKLRNNDKPDS----PKLFLLGSSASSPKGGSDTSREHNL 677
Query: 54 DSVIPKPLKASALAACLFQALGITQPSHEKXXXXXXXXXXXXXXXXXXXXXXKNILVVDD 113
+ VI KPL+AS L L +ALG H + K I+VVDD
Sbjct: 678 N-VIMKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHK-------KQIIVVDD 729
Query: 114 NKVNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMDGFEATRQIR 173
N VNL+VAAG LKKYGA+V C +SGK A++LL+ PH FD C MDIQMPEMDGFEATR+IR
Sbjct: 730 NIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIR 789
Query: 174 AMEGKANEQADDSESGSEIAAKTAKWHLPILAMTADVIQATHEECTKCGMDGYVSKPFEE 233
ME NE+ + E+ E A+ +W PILAMTADVIQATHEEC K MDGYVSKPFE
Sbjct: 790 VMERDLNERIERGEAPPECAS-IQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEG 848
Query: 234 KQLFQAVQKFL 244
+QL+ V +F
Sbjct: 849 EQLYSEVARFF 859
>Os06g0654300 Histidine kinase, homodimeric domain containing protein
Length = 1067
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 87/150 (58%), Gaps = 12/150 (8%)
Query: 108 ILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMDGFE 167
IL+V+DNKVN+ VA L++ G ++ V +G +A+ +Q ++D+ LMD+ MPEMDG +
Sbjct: 918 ILLVEDNKVNIMVAKSMLEQLGHGIDIVNNGLEAIRAIQ-KRQYDIILMDVHMPEMDGLQ 976
Query: 168 ATRQIRAMEGKA------NEQADDSESGSEIAAKTAKW-----HLPILAMTADVIQATHE 216
AT+ IR+ E + D +GS+ + A +PI+AMTA+ + E
Sbjct: 977 ATKFIRSFENTGCWDTSVKPEHDQIIAGSDNLSDCAHMKKQGKRVPIIAMTANSFSESAE 1036
Query: 217 ECTKCGMDGYVSKPFEEKQLFQAVQKFLGP 246
EC GMD Y+SKP + + + +Q++L P
Sbjct: 1037 ECLAAGMDSYISKPVNFQNIKECLQQYLPP 1066
>AF497627
Length = 653
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 22/137 (16%)
Query: 108 ILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMDGFE 167
IL+++DN++N ++A ++ +G +++ E+G + LL +++DL LMD+QMP DG++
Sbjct: 424 ILLLEDNRLNQKLAQNVIEGFGFEIDIAENGDQGIKLLS-ENQYDLVLMDLQMPARDGYQ 482
Query: 168 ATRQIRAMEGKANEQADDSESGSEIAAKTAKWHLPILAMTADVIQATHEECTKCGMDGYV 227
T IR SE +EI PI+AMTA + H C GMDGYV
Sbjct: 483 TTHYIR------------SELKNEI---------PIIAMTAHSLADEHHRCLNAGMDGYV 521
Query: 228 SKPFEEKQLFQAVQKFL 244
KPF++ +L +A+++ L
Sbjct: 522 PKPFKQHELLEAIKQAL 538
>AK110426
Length = 835
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 36/166 (21%)
Query: 106 KNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMDG 165
+ +LVV+DN +N +VA L G V G A++L + FD+ LMD+QMP MDG
Sbjct: 637 RKVLVVEDNIINQKVATKMLTSLGCSVTIAGDGGAAVALFE-RGTFDVILMDVQMPIMDG 695
Query: 166 FEATRQIRAMEGKANEQADDSE--------------------------------SGSEIA 193
F+AT +IR +E ++ + E
Sbjct: 696 FQATARIRHIEHHRAHTWEEYRCEEKPKSKELEPEEDDENENENEDEKEAEIGPATDETE 755
Query: 194 AKTA---KWHLPILAMTADVIQATHEECTKCGMDGYVSKPFEEKQL 236
AK A +PI+A+TA + EC + GMD +++KPF ++ L
Sbjct: 756 AKRATHGTRRVPIVALTASATRDYETECLEKGMDRFLTKPFRKETL 801
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,016,425
Number of extensions: 238198
Number of successful extensions: 586
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 5
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)