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Os03g0717700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Response regulator receiver domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0166) R2 : 0.693
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.31 (0.0416) R2dC : 0.676 R2C : 0.663
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.205 (0.0348) R2dN8 : 0.0303 R2N8 : 0.0164
σ : 0.312
deviance : 44.4
__
_____
C
peak time of C : 8.59
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.41 0.28 10.6 0.775 1.32 0.0333 -0.961 2.54 -0.0134 8.55 19.27 4724 -- --
40.05 0.295 10.7 -0.266 1.32 0.345 -0.968 -- -0.342 8.55 3.734 47520 -- --
38.08 0.287 10.6 0.735 1.33 0.0807 -- 2.59 -0.0145 8.63 18.62 5029 -- --
38.1 0.287 10.7 -0.408 1.32 0.488 -- -- -0.395 8.62 31.3 47520 -- --
136.09 0.543 10.6 0.811 -- -0.0242 -- 2.58 0.055 -- 17.16 6586 -- --
41.23 0.301 10.7 0.0935 1.31 -- -0.98 -- -0.199 8.53 -- -- -- --
44.3 0.312 10.7 0.0635 1.31 -- -- -- -0.198 8.59 -- -- -- --
123.2 0.517 10.7 0.325 -- -1.09 -- -- -0.0258 -- 2.785 619 -- --
40.34 0.296 10.7 -- 1.32 0.283 -- -- -0.292 8.62 30.98 47520 -- --
141.42 0.556 10.7 0.0679 -- -- -- -- -0.186 -- -- -- -- --
44.4 0.312 10.7 -- 1.31 -- -- -- -0.205 8.59 -- -- -- --
125.75 0.522 10.7 -- -- -0.966 -- -- -0.0765 -- -0.3037 613 -- --
141.54 0.555 10.7 -- -- -- -- -- -0.194 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.47 wind 1.0 43200 > th dose independent rect. 10 1
2 31.56 radiation 10.0 43200 > th dose independent rect. 8 3
3 31.65 wind 1.0 43200 < th dose independent rect. 10 1
9 31.88 wind 1.0 43200 < th dose dependent rect. 10 15
12 31.96 radiation 1.0 43200 > th dose independent rect. 11 6
13 31.96 radiation 1.0 43200 < th dose independent rect. 11 6
15 31.98 radiation 1.0 43200 < th dose dependent rect. 13 4
27 32.07 radiation 1.0 43200 < th dose independent rect. 13 3
29 32.08 radiation 1.0 14400 > th dose independent rect. 18 1
41 32.09 radiation 1.0 43200 < th dose dependent rect. 4 1
42 32.09 radiation 1.0 43200 < th dose dependent rect. 2 3
50 32.12 radiation 1.0 43200 < th dose dependent rect. 19 10
52 32.13 radiation 1.0 43200 < th dose dependent rect. 21 8
58 32.16 radiation 1.0 43200 < th dose dependent rect. 16 1
61 32.18 wind 1.0 43200 < th dose independent rect. 4 2
62 32.18 precipitation 0.1 43200 > th dose independent rect. 13 2
63 32.18 precipitation 0.1 43200 < th dose independent rect. 12 3
65 32.18 precipitation 0.1 43200 < th dose dependent rect. 12 3
68 32.19 wind 1.0 43200 > th dose independent rect. 10 15
71 32.20 temperature 30.0 43200 < th dose dependent rect. 10 2
78 32.22 radiation 10.0 14400 > th dose independent rect. 5 2
95 32.24 wind 1.0 43200 < th dose independent rect. 2 4
98 32.26 wind 1.0 43200 > th dose independent rect. 4 2
111 32.30 radiation 1.0 43200 < th dose independent rect. 11 2
113 32.30 wind 1.0 43200 < th dose dependent rect. 10 1
114 32.30 temperature 10.0 43200 > th dose dependent rect. 11 1
122 32.32 wind 1.0 43200 < th dose independent rect. 10 15
127 32.33 wind 1.0 43200 > th dose independent rect. 2 4
129 32.33 radiation 1.0 43200 < th dose dependent rect. 11 3
135 32.34 precipitation 0.1 43200 < th dose independent rect. 6 9
139 32.34 precipitation 0.1 43200 < th dose dependent rect. 6 9
142 32.35 precipitation 0.1 43200 > th dose dependent rect. 14 2
150 32.36 radiation 1.0 43200 > th dose independent rect. 6 11
151 32.36 radiation 1.0 43200 < th dose independent rect. 6 11
164 32.38 precipitation 0.1 43200 > th dose independent rect. 6 9
196 32.41 temperature 25.0 43200 < th dose dependent rect. 21 1
203 32.42 temperature 25.0 43200 < th dose independent rect. 12 1
208 32.42 precipitation 0.1 43200 > th dose dependent rect. 12 3
214 32.43 precipitation 0.1 43200 < th dose independent rect. 9 6
218 32.43 wind 1.0 43200 > th dose independent rect. 14 11
225 32.43 precipitation 0.1 43200 < th dose dependent rect. 9 6
228 32.44 humidity 80.0 43200 > th dose independent rect. 20 1
232 32.44 temperature 25.0 43200 < th dose independent rect. 10 3
253 32.46 temperature 25.0 43200 > th dose independent rect. 9 4
260 32.46 temperature 15.0 43200 > th dose dependent rect. 21 1
273 32.47 precipitation 0.1 43200 > th dose independent rect. 9 6
312 32.48 temperature 30.0 43200 < th dose dependent rect. 9 13
338 32.49 precipitation 0.1 43200 > th dose dependent rect. 5 8
400 32.51 wind 1.0 43200 < th dose dependent sin 18 NA
401 32.51 temperature 30.0 43200 < th dose dependent sin 21 NA
418 32.51 humidity 90.0 43200 > th dose dependent rect. 10 6
436 32.52 humidity 90.0 43200 < th dose independent rect. 12 1
441 32.52 temperature 30.0 43200 < th dose dependent sin 19 NA
506 32.54 temperature 25.0 43200 > th dose independent rect. 12 1
507 32.54 temperature 20.0 43200 < th dose independent rect. 2 1
514 32.54 wind 1.0 43200 < th dose independent rect. 13 12
541 32.54 temperature 10.0 43200 > th dose dependent rect. 9 15
586 32.55 temperature 10.0 43200 > th dose dependent rect. 10 13
620 32.56 temperature 20.0 43200 > th dose independent rect. 22 7
663 32.56 temperature 30.0 43200 < th dose dependent rect. 20 18
692 32.57 humidity 80.0 43200 < th dose independent rect. 8 1
694 32.57 temperature 20.0 43200 < th dose independent rect. 23 6
699 32.57 temperature 20.0 43200 > th dose independent rect. 23 10
705 32.57 temperature 30.0 43200 < th dose dependent no NA NA
797 32.58 temperature 20.0 43200 > th dose independent rect. 2 1
800 32.58 temperature 20.0 43200 > th dose independent rect. 23 4
801 32.58 humidity 90.0 43200 > th dose independent rect. 10 4
815 32.58 temperature 10.0 43200 > th dose dependent sin 19 NA
861 32.58 temperature 30.0 43200 < th dose dependent rect. 23 15
897 32.58 temperature 30.0 43200 < th dose dependent rect. 14 23
905 32.59 temperature 20.0 43200 > th dose independent sin 8 NA
917 32.59 temperature 20.0 43200 > th dose independent rect. 2 7
932 32.59 temperature 20.0 43200 < th dose independent rect. 23 10
948 32.59 temperature 10.0 43200 > th dose dependent sin 17 NA
961 32.59 humidity 90.0 43200 > th dose dependent rect. 12 2