Os06g0654300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histidine kinase, homodimeric domain containing protein.
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Os06g0654300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histidine kinase, homodimeric domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.8 | 0.519 | 3.54 | 0.887 | 0.555 | 0.231 | 1.2 | 5.02 | -0.00673 | 20 | 26.08 | 271 | -- | -- |
| 123.92 | 0.518 | 3.59 | 0.429 | 0.525 | 0.852 | 1.47 | -- | -0.0687 | 19.9 | 29.5 | 288 | -- | -- |
| 124.9 | 0.521 | 3.51 | 1.05 | 0.576 | 0.0644 | -- | 6.1 | 0.0441 | 19.5 | 25.7 | 368 | -- | -- |
| 129.07 | 0.529 | 3.58 | 0.324 | 0.54 | 0.952 | -- | -- | -0.0484 | 19.6 | 29.6 | 299 | -- | -- |
| 137.16 | 0.545 | 3.51 | 0.884 | -- | 0.563 | -- | 5.74 | -0.00238 | -- | 26.02 | 384 | -- | -- |
| 134.89 | 0.544 | 3.6 | 0.455 | 0.747 | -- | 1.82 | -- | -0.107 | 19.1 | -- | -- | -- | -- |
| 143.56 | 0.561 | 3.6 | 0.42 | 0.754 | -- | -- | -- | -0.102 | 19 | -- | -- | -- | -- |
| 141.44 | 0.554 | 3.57 | 0.277 | -- | 1.2 | -- | -- | -0.0527 | -- | 28.96 | 385 | -- | -- |
| 131.77 | 0.535 | 3.59 | -- | 0.517 | 1.01 | -- | -- | -0.081 | 19.6 | 29.5 | 297 | -- | -- |
| 173.42 | 0.615 | 3.58 | 0.404 | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
| 148.2 | 0.569 | 3.61 | -- | 0.749 | -- | -- | -- | -0.149 | 19 | -- | -- | -- | -- |
| 143.44 | 0.558 | 3.57 | -- | -- | 1.23 | -- | -- | -0.0836 | -- | 28.87 | 394 | -- | -- |
| 177.72 | 0.622 | 3.59 | -- | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.94 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 10 |
| 4 | 118.14 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 7 |
| 20 | 119.17 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 47 | 119.74 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 20 |
| 52 | 119.81 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 16 |
| 119 | 120.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 128 | 120.59 | temperature | 25 | 270 | > th | dose dependent | sin | 21 | NA |
| 161 | 120.80 | temperature | 25 | 90 | > th | dose dependent | rect. | 2 | 3 |
| 162 | 120.81 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 3 |
| 176 | 120.89 | temperature | 10 | 90 | > th | dose dependent | sin | 18 | NA |
| 179 | 120.91 | temperature | 25 | 90 | > th | dose dependent | sin | 17 | NA |
| 187 | 120.96 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 13 |
| 193 | 121.02 | temperature | 30 | 90 | < th | dose dependent | sin | 19 | NA |
| 203 | 121.07 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 6 |
| 235 | 121.25 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 22 |
| 256 | 121.33 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 1 |
| 260 | 121.34 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 13 |
| 321 | 121.56 | temperature | 25 | 10 | > th | dose independent | rect. | 13 | 7 |
| 325 | 121.59 | humidity | 80 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 400 | 121.88 | humidity | 80 | 30 | < th | dose dependent | rect. | 13 | 21 |
| 412 | 121.92 | humidity | 80 | 10 | < th | dose dependent | rect. | 13 | 7 |
| 439 | 122.00 | humidity | 80 | 10 | < th | dose dependent | rect. | 13 | 11 |
| 481 | 122.09 | humidity | 80 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 542 | 122.23 | temperature | 30 | 90 | < th | dose independent | rect. | 10 | 15 |
| 557 | 122.25 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 587 | 122.28 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 22 |
| 588 | 122.28 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 1 | 2 |
| 666 | 122.42 | humidity | 60 | 270 | < th | dose independent | rect. | 12 | 5 |
| 751 | 122.65 | temperature | 30 | 270 | < th | dose independent | sin | 20 | NA |
| 763 | 122.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 768 | 122.70 | temperature | 30 | 270 | > th | dose independent | sin | 20 | NA |
| 811 | 122.76 | humidity | 70 | 90 | < th | dose independent | rect. | 13 | 20 |
| 876 | 122.90 | humidity | 90 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 891 | 122.94 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 900 | 122.97 | humidity | 90 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 907 | 122.98 | humidity | 60 | 270 | > th | dose independent | rect. | 8 | 14 |
| 963 | 123.03 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 985 | 123.05 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 1 |
| 987 | 123.05 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 10 |