BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0713100 Os03g0713100|J033048F03
(141 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0713100 Similar to Dynamin-related protein 1C (Dynamin... 231 9e-62
Os10g0567800 Similar to Dynamin-related protein 1E (Dynamin... 126 6e-30
Os05g0556100 Similar to SDL5A 120 2e-28
Os09g0572900 Similar to Dynamin-related protein 1E (Dynamin... 115 1e-26
Os01g0681100 Similar to Dynamin-related protein 1B (Dynamin... 112 8e-26
AK110298 75 2e-14
Os04g0381000 Dynamin family protein 71 2e-13
AK111167 70 7e-13
>Os03g0713100 Similar to Dynamin-related protein 1C (Dynamin-like protein C)
(Dynamin-like protein 5) (Dynamin-like protein DLP1)
Length = 141
Score = 231 bits (590), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 116/141 (82%), Positives = 116/141 (82%)
Query: 1 MATMGSLIGLVNRIQRACTVLXXXXXXXXXXSLWEALPXXXXXXXXXXXXXXXLESIVGR 60
MATMGSLIGLVNRIQRACTVL SLWEALP LESIVGR
Sbjct: 1 MATMGSLIGLVNRIQRACTVLGDHGGGGEGGSLWEALPSVAVVGGQSSGKSSVLESIVGR 60
Query: 61 DFLPRGSGIVTRRPLVLQLHKTEGGQEYAEFLHAPRKRFTDFGKGSLPYLCFAVQQVDLC 120
DFLPRGSGIVTRRPLVLQLHKTEGGQEYAEFLHAPRKRFTDFGKGSLPYLCFAVQQVDLC
Sbjct: 61 DFLPRGSGIVTRRPLVLQLHKTEGGQEYAEFLHAPRKRFTDFGKGSLPYLCFAVQQVDLC 120
Query: 121 IQFHLLELVLCKLQSCLNSNE 141
IQFHLLELVLCKLQSCLNSNE
Sbjct: 121 IQFHLLELVLCKLQSCLNSNE 141
>Os10g0567800 Similar to Dynamin-related protein 1E (Dynamin-like protein E)
(Dynamin-like protein 4) (Dynamin-like protein DLP2)
Length = 618
Score = 126 bits (316), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 72/107 (67%), Gaps = 4/107 (3%)
Query: 1 MATMGSLIGLVNRIQRACTVLXXXXXXXXXXSL---WEALPXXXXXXXXXXXXXXXLESI 57
MATM ++I LVNRIQRACTVL SL WEALP LESI
Sbjct: 1 MATMENVIVLVNRIQRACTVLGDHGGGDGTASLPTLWEALPSVAVVGGQSSGKSSVLESI 60
Query: 58 VGRDFLPRGSGIVTRRPLVLQLHKTEGG-QEYAEFLHAPRKRFTDFG 103
VGRDFLPRGSGIVTRRPLVLQLHKTE G QEYAEFLH P++RF DF
Sbjct: 61 VGRDFLPRGSGIVTRRPLVLQLHKTEDGVQEYAEFLHMPKRRFNDFA 107
>Os05g0556100 Similar to SDL5A
Length = 609
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/100 (56%), Positives = 68/100 (68%)
Query: 4 MGSLIGLVNRIQRACTVLXXXXXXXXXXSLWEALPXXXXXXXXXXXXXXXLESIVGRDFL 63
M +LI LVN++QRACT L +LW++LP LES+VG+DFL
Sbjct: 1 MENLISLVNKLQRACTALGDHGEESALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFL 60
Query: 64 PRGSGIVTRRPLVLQLHKTEGGQEYAEFLHAPRKRFTDFG 103
PRGSGIVTRRPLVLQLH+ +G +EYAEF+H PRKRFTDF
Sbjct: 61 PRGSGIVTRRPLVLQLHRIDGDREYAEFMHLPRKRFTDFA 100
>Os09g0572900 Similar to Dynamin-related protein 1E (Dynamin-like protein E)
(Dynamin-like protein 4) (Dynamin-like protein DLP2)
Length = 626
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 69/106 (65%), Gaps = 3/106 (2%)
Query: 1 MATMGSLIGLVNRIQRACTVLXXXX--XXXXXXSLWEALPXXXXXXXXXXXXXXXLESIV 58
MA+M LIGL+NRIQRACT L +LWE+LP LESIV
Sbjct: 1 MASMEGLIGLMNRIQRACTALGDHGGGEGANLPTLWESLPTIAVVGGQSSGKSSVLESIV 60
Query: 59 GRDFLPRGSGIVTRRPLVLQLHKTE-GGQEYAEFLHAPRKRFTDFG 103
GRDFLPRGSGIVTRRPLVLQLH+ + G +YAEFLH P+ RF+DF
Sbjct: 61 GRDFLPRGSGIVTRRPLVLQLHQIDKGAHDYAEFLHLPKTRFSDFA 106
>Os01g0681100 Similar to Dynamin-related protein 1B (Dynamin-like protein B)
Length = 184
Score = 112 bits (280), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 65/100 (65%)
Query: 4 MGSLIGLVNRIQRACTVLXXXXXXXXXXSLWEALPXXXXXXXXXXXXXXXLESIVGRDFL 63
M +LI LVN++QRACT L +LW++LP LES+VG+DFL
Sbjct: 1 MENLISLVNKLQRACTALGDHGEESALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFL 60
Query: 64 PRGSGIVTRRPLVLQLHKTEGGQEYAEFLHAPRKRFTDFG 103
PRGSGIVTRRPLVLQLH+ G +EYAEF+H P ++TDF
Sbjct: 61 PRGSGIVTRRPLVLQLHRINGDREYAEFMHNPTVKYTDFA 100
>AK110298
Length = 625
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 4 MGSLIGLVNRIQRACTVLXXXXXXXXXXSLWEALPXXXXXXXXXXXXXXXLESIVGRDFL 63
M ++ LVNR+Q+ CT L L + L LE++VGRDFL
Sbjct: 1 MDRVVTLVNRLQQICTQLGDTAGNSV---LVDKLSSIVVVGGQSSGKSSVLEAVVGRDFL 57
Query: 64 PRGSGIVTRRPLVLQLHKTEG--GQEYAEFLHAPRKRFTDFGK 104
PRG+GIVTRRPLVL L + QEY EF+H ++F DF K
Sbjct: 58 PRGTGIVTRRPLVLNLVHVDDPKAQEYGEFMHRQGQKFFDFDK 100
>Os04g0381000 Dynamin family protein
Length = 797
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 54 LESIVGRDFLPRGSGIVTRRPLVLQLHKTEGGQEYAEFLHAPRKRFTDFGK 104
LE++VGRDFLPRG I TRRPLVLQL + +E+ EFLHAP +RF DF +
Sbjct: 62 LEALVGRDFLPRGPDICTRRPLVLQLVRHSAPEEWGEFLHAPARRFHDFDQ 112
>AK111167
Length = 795
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 42/70 (60%), Gaps = 20/70 (28%)
Query: 54 LESIVGRDFLPRGSGIVTRRPLVLQLHKTEGGQ--------------------EYAEFLH 93
LE+IVGRDFLPRGSGIVTRRPL+LQL E + E+AEF H
Sbjct: 47 LENIVGRDFLPRGSGIVTRRPLILQLINVEEDESESNDTVHVSYQNPTQARRSEWAEFHH 106
Query: 94 APRKRFTDFG 103
P +RFTDFG
Sbjct: 107 IPGRRFTDFG 116
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.142 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,029,212
Number of extensions: 145612
Number of successful extensions: 222
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 8
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 151 (62.8 bits)