Os05g0556100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SDL5A.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0556100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to SDL5A.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.3 | 0.217 | 12.1 | -0.0307 | 0.305 | 0.665 | -0.572 | -0.908 | -0.14 | 5.56 | 9.994 | 572 | -- | -- |
| 21.83 | 0.218 | 12.1 | 0.134 | 0.309 | 0.646 | -0.416 | -- | -0.0965 | 5.42 | 13.42 | 559 | -- | -- |
| 22 | 0.218 | 12.1 | 0.025 | 0.309 | 0.678 | -- | -0.545 | -0.123 | 5.47 | 12.01 | 560 | -- | -- |
| 22.22 | 0.22 | 12.1 | 0.12 | 0.316 | 0.668 | -- | -- | -0.0984 | 5.41 | 11.65 | 546 | -- | -- |
| 23.29 | 0.225 | 12.1 | -0.0981 | -- | 0.503 | -- | -0.715 | -0.143 | -- | 14.35 | 2597 | -- | -- |
| 26.89 | 0.243 | 12.1 | 0.271 | 0.174 | -- | -0.456 | -- | -0.000657 | 4.3 | -- | -- | -- | -- |
| 27.43 | 0.245 | 12.1 | 0.275 | 0.171 | -- | -- | -- | 0.0018 | 3.73 | -- | -- | -- | -- |
| 23.7 | 0.227 | 12.1 | 0.121 | -- | 0.573 | -- | -- | -0.0766 | -- | 14.23 | 1202 | -- | -- |
| 22.56 | 0.221 | 12.1 | -- | 0.326 | 0.714 | -- | -- | -0.119 | 5.52 | 10.04 | 557 | -- | -- |
| 29.05 | 0.252 | 12.1 | 0.282 | -- | -- | -- | -- | 0.00636 | -- | -- | -- | -- | -- |
| 29.43 | 0.254 | 12.1 | -- | 0.176 | -- | -- | -- | -0.0289 | 3.72 | -- | -- | -- | -- |
| 23.95 | 0.228 | 12.1 | -- | -- | 0.538 | -- | -- | -0.113 | -- | 13.52 | 2620 | -- | -- |
| 31.15 | 0.261 | 12.1 | -- | -- | -- | -- | -- | -0.025 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.25 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 15 | 19.78 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 33 | 20.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 10 |
| 40 | 20.35 | temperature | 20.0 | 30 | > th | dose independent | rect. | 14 | 19 |
| 46 | 20.43 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 21 |
| 60 | 20.60 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 75 | 20.78 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 7 |
| 80 | 20.80 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 14 | 19 |
| 82 | 20.83 | temperature | 20.0 | 30 | > th | dose independent | rect. | 14 | 21 |
| 85 | 20.84 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 109 | 20.96 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 115 | 20.99 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 124 | 21.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 131 | 21.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 149 | 21.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 159 | 21.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 163 | 21.14 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 166 | 21.15 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 14 | 8 |
| 188 | 21.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 200 | 21.23 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 16 |
| 220 | 21.26 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 230 | 21.30 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 235 | 21.31 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 9 |
| 239 | 21.32 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 242 | 21.32 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 17 | 16 |
| 265 | 21.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 293 | 21.40 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 307 | 21.43 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 10 |
| 321 | 21.45 | humidity | 70.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 325 | 21.46 | temperature | 10.0 | 720 | > th | dose dependent | no | NA | NA |
| 333 | 21.47 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 347 | 21.48 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 8 |
| 354 | 21.49 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 14 |
| 398 | 21.52 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 407 | 21.54 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 421 | 21.55 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 455 | 21.57 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 15 | 3 |
| 469 | 21.58 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 496 | 21.60 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 551 | 21.67 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 553 | 21.67 | temperature | 20.0 | 30 | > th | dose independent | rect. | 17 | 16 |
| 575 | 21.68 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 584 | 21.68 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 592 | 21.69 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 606 | 21.70 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 4 |
| 621 | 21.70 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 623 | 21.70 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 628 | 21.70 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 6 | 7 |
| 648 | 21.71 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 657 | 21.71 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 8 | 17 |
| 665 | 21.72 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 727 | 21.75 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 761 | 21.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 7 |
| 765 | 21.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 766 | 21.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 771 | 21.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 804 | 21.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 16 |
| 814 | 21.78 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 843 | 21.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 866 | 21.80 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 888 | 21.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 8 |
| 899 | 21.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 933 | 21.82 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 19 |
| 960 | 21.82 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 993 | 21.84 | radiation | 30.0 | 270 | < th | dose independent | rect. | 1 | 7 |