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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0681100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Dynamin-related protein 1B (Dynamin-like protein B).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0422) R2 : 0.313
β1 : 1.26 (0.154) R2dD : 0.104 R2D : 0.0686
β2 : 1.22 (0.108) R2dC : 0.194 R2C : 0.174
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.496 (0.09) R2dN8 : 0.0614 R2N8 : 0.0164
σ : 0.793
deviance : 286.43
__
_____
C
peak time of C : 19.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.52 0.767 3.3 1.05 1.23 0.238 1.53 2.96 0.498 19.6 0.3682 6489 -- --
274.39 0.771 3.33 1.19 1.27 0.429 1.64 -- 0.558 19.7 0.5018 16318 -- --
273.13 0.77 3.3 1.02 1.23 0.226 -- 2.94 0.502 19.6 0.3722 6488 -- --
277.92 0.776 3.32 0.966 1.21 0.666 -- -- 0.57 19.8 0.6691 19997 -- --
354.45 0.877 3.28 1.02 -- 0.27 -- 2.72 0.488 -- 0.4376 6431 -- --
280.04 0.785 3.33 1.3 1.22 -- 1.5 -- 0.494 19.7 -- -- -- --
286.43 0.793 3.33 1.26 1.22 -- -- -- 0.496 19.6 -- -- -- --
356.18 0.879 3.29 1.05 -- 0.874 -- -- 0.513 -- 0.9999 2067 -- --
291.01 0.795 3.33 -- 1.2 1.06 -- -- 0.529 19.8 0.7093 23184 -- --
366.7 0.895 3.3 1.24 -- -- -- -- 0.478 -- -- -- -- --
328.14 0.847 3.36 -- 1.21 -- -- -- 0.356 19.7 -- -- -- --
369.49 0.895 3.29 -- -- 1.09 -- -- 0.529 -- 0.6054 23505 -- --
407.34 0.942 3.33 -- -- -- -- -- 0.34 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 253.97 atmosphere 1010.0 10 > th dose independent rect. 24 11
3 254.01 atmosphere 1010.0 90 > th dose independent rect. 24 9
7 254.16 atmosphere 1010.0 90 > th dose independent rect. 8 1
8 254.16 atmosphere 1010.0 10 > th dose independent rect. 9 1
62 259.51 wind 1.0 90 < th dose independent rect. 8 2
63 260.03 wind 1.0 90 < th dose dependent rect. 8 2
66 262.81 atmosphere 1005.0 90 > th dose dependent rect. 9 1
68 263.13 atmosphere 1005.0 10 > th dose dependent rect. 9 2
70 263.60 humidity 90.0 90 > th dose independent rect. 13 4
72 263.62 humidity 90.0 4320 < th dose independent rect. 13 1
74 263.75 humidity 90.0 90 > th dose independent rect. 10 7
78 264.04 atmosphere 1005.0 30 > th dose dependent rect. 3 8
80 264.19 precipitation 0.1 14400 > th dose dependent rect. 13 3
82 264.42 humidity 90.0 10 > th dose dependent rect. 13 5
86 264.48 humidity 80.0 14400 > th dose independent rect. 15 1
89 264.63 precipitation 0.1 14400 > th dose dependent rect. 18 1
92 264.78 humidity 90.0 90 > th dose dependent rect. 13 4
94 264.79 precipitation 0.1 14400 > th dose independent rect. 13 3
95 264.80 precipitation 0.1 14400 < th dose independent rect. 18 1
96 264.80 precipitation 0.1 14400 < th dose dependent rect. 18 1
97 264.82 precipitation 0.1 14400 < th dose independent rect. 13 3
98 264.82 precipitation 0.1 14400 < th dose dependent rect. 13 3
99 264.83 humidity 90.0 10 > th dose independent rect. 13 6
111 265.00 precipitation 0.1 14400 > th dose independent rect. 18 2
115 265.03 precipitation 0.1 4320 > th dose dependent rect. 22 19
117 265.05 precipitation 0.1 4320 > th dose dependent rect. 22 17
122 265.16 humidity 80.0 14400 > th dose dependent rect. 13 1
130 265.20 radiation 10.0 90 < th dose dependent rect. 14 1
137 265.24 precipitation 0.1 4320 > th dose dependent rect. 2 13
167 265.41 radiation 1.0 10 < th dose independent rect. 11 5
175 265.43 radiation 1.0 10 < th dose independent rect. 13 3
191 265.56 radiation 1.0 10 < th dose independent rect. 15 1
214 265.63 humidity 80.0 1440 > th dose dependent rect. 6 2
225 265.72 humidity 90.0 90 > th dose dependent rect. 14 1
243 265.90 precipitation 0.1 4320 > th dose independent rect. 22 19
246 265.92 precipitation 0.1 4320 < th dose independent rect. 22 19
248 265.92 precipitation 0.1 4320 < th dose dependent rect. 22 19
269 266.14 precipitation 0.1 4320 < th dose independent rect. 2 13
271 266.14 precipitation 0.1 4320 < th dose dependent rect. 2 13
275 266.16 precipitation 0.1 4320 > th dose dependent rect. 18 20
277 266.18 precipitation 0.1 4320 < th dose independent rect. 24 15
278 266.18 precipitation 0.1 4320 < th dose dependent rect. 24 15
280 266.19 precipitation 0.1 4320 > th dose independent rect. 2 13
296 266.25 precipitation 0.1 4320 > th dose independent rect. 24 15
324 266.37 humidity 80.0 10 < th dose independent rect. 11 7
336 266.43 precipitation 0.1 4320 > th dose dependent rect. 18 10
340 266.45 precipitation 0.1 4320 > th dose dependent rect. 18 12
405 266.58 humidity 90.0 1440 > th dose independent rect. 6 2
427 266.69 humidity 60.0 1440 > th dose dependent rect. 6 2
445 266.76 precipitation 0.1 4320 > th dose dependent sin 6 NA
446 266.76 precipitation 0.1 4320 > th dose dependent rect. 7 7
456 266.80 precipitation 0.1 4320 > th dose independent rect. 18 23
457 266.80 precipitation 0.1 4320 < th dose independent rect. 18 23
460 266.80 precipitation 0.1 4320 < th dose dependent rect. 18 23
471 266.88 humidity 90.0 1440 < th dose independent rect. 5 3
473 266.89 temperature 25.0 90 < th dose independent rect. 8 1
491 266.96 precipitation 0.1 4320 < th dose independent rect. 18 21
495 266.96 precipitation 0.1 4320 < th dose dependent rect. 18 21
499 266.98 precipitation 0.1 4320 > th dose dependent rect. 5 9
504 267.00 precipitation 0.1 4320 > th dose independent rect. 18 21
534 267.12 wind 3.0 14400 < th dose independent rect. 24 2
553 267.21 precipitation 0.1 4320 < th dose independent rect. 3 1
555 267.21 precipitation 0.1 4320 < th dose dependent rect. 3 1
570 267.30 wind 3.0 14400 > th dose independent rect. 24 2
578 267.35 precipitation 0.1 4320 < th dose independent rect. 18 12
580 267.35 precipitation 0.1 4320 < th dose dependent rect. 18 12
585 267.38 precipitation 0.1 4320 > th dose independent rect. 18 12
587 267.40 precipitation 0.1 4320 > th dose independent sin 5 NA
588 267.40 precipitation 0.1 4320 < th dose independent sin 5 NA
590 267.40 humidity 80.0 14400 > th dose independent rect. 9 7
591 267.40 precipitation 0.1 4320 < th dose dependent sin 5 NA
595 267.40 atmosphere 1005.0 90 > th dose dependent rect. 5 5
605 267.42 precipitation 0.1 4320 < th dose independent rect. 18 14
606 267.42 precipitation 0.1 4320 < th dose dependent rect. 18 14
607 267.43 precipitation 0.1 4320 > th dose independent rect. 18 14
626 267.51 precipitation 0.1 4320 < th dose independent rect. 3 3
627 267.51 precipitation 0.1 4320 < th dose dependent rect. 3 3
629 267.53 precipitation 0.1 4320 > th dose independent rect. 3 3
636 267.57 wind 1.0 90 < th dose dependent rect. 12 1
638 267.59 precipitation 0.1 4320 > th dose independent rect. 3 1
642 267.60 precipitation 0.1 4320 > th dose dependent rect. 2 4
648 267.64 precipitation 0.1 4320 > th dose independent rect. 18 18
678 267.66 humidity 80.0 1440 > th dose dependent rect. 2 13
702 267.72 precipitation 0.1 4320 > th dose dependent rect. 22 8
724 267.78 precipitation 0.1 4320 > th dose dependent rect. 22 10
752 267.88 humidity 80.0 14400 < th dose independent rect. 10 1
753 267.88 humidity 80.0 14400 < th dose independent rect. 10 6
767 267.92 humidity 80.0 14400 > th dose independent rect. 10 1
817 268.05 wind 5.0 14400 < th dose dependent rect. 2 1
861 268.13 wind 1.0 14400 > th dose independent rect. 18 1
863 268.13 wind 3.0 14400 > th dose independent rect. 22 4
878 268.16 wind 1.0 14400 > th dose dependent rect. 24 3
895 268.20 precipitation 0.1 4320 > th dose dependent rect. 3 1
929 268.28 precipitation 0.1 14400 > th dose independent rect. 3 17
930 268.28 precipitation 0.1 14400 < th dose independent rect. 3 17
931 268.28 precipitation 0.1 14400 < th dose independent rect. 24 20
936 268.28 precipitation 0.1 14400 < th dose dependent rect. 3 17
937 268.28 precipitation 0.1 14400 < th dose dependent rect. 24 20
941 268.29 precipitation 0.1 14400 > th dose independent rect. 24 20
967 268.35 precipitation 0.1 14400 < th dose independent rect. 5 1
971 268.35 precipitation 0.1 14400 < th dose dependent rect. 5 1
991 268.39 precipitation 0.1 4320 < th dose independent rect. 22 10
998 268.39 precipitation 0.1 4320 < th dose dependent rect. 22 10
999 268.40 precipitation 0.1 14400 > th dose independent rect. 13 7