BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0703900 Os03g0703900|AK073877
         (277 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0703900  Conserved hypothetical protein                      512   e-145
Os02g0693500  Conserved hypothetical protein                      296   8e-81
Os04g0592600  Conserved hypothetical protein                      289   1e-78

>Os03g0703900 Conserved hypothetical protein
          Length = 277

 Score =  512 bits (1318), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/277 (93%), Positives = 259/277 (93%)

Query: 1   MPFPRRDIEXXXXXXXXXXXXXPAAKRGKPEAAGARPSLTRTEXXXXXSVLVLFLVGIFC 60
           MPFPRRDIE             PAAKRGKPEAAGARPSLTRTE     SVLVLFLVGIFC
Sbjct: 1   MPFPRRDIEAAGAGSGSGDDDSPAAKRGKPEAAGARPSLTRTEAAAAASVLVLFLVGIFC 60

Query: 61  VFRAAPRREFEQILRLPRSLADVRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGT 120
           VFRAAPRREFEQILRLPRSLADVRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGT
Sbjct: 61  VFRAAPRREFEQILRLPRSLADVRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGT 120

Query: 121 IFMSLLAGALFGVVKGGILVVFTATAGASSCYFVSKLIGRPLISWLWPEKLRYFQSEIAK 180
           IFMSLLAGALFGVVKGGILVVFTATAGASSCYFVSKLIGRPLISWLWPEKLRYFQSEIAK
Sbjct: 121 IFMSLLAGALFGVVKGGILVVFTATAGASSCYFVSKLIGRPLISWLWPEKLRYFQSEIAK 180

Query: 181 RKEKLLNYMLFLRITPTLPNTFINMASPIVDIPFHIFFAATLIGLIPASYITVKAGRALG 240
           RKEKLLNYMLFLRITPTLPNTFINMASPIVDIPFHIFFAATLIGLIPASYITVKAGRALG
Sbjct: 181 RKEKLLNYMLFLRITPTLPNTFINMASPIVDIPFHIFFAATLIGLIPASYITVKAGRALG 240

Query: 241 DLRSLRELYDSKTLVILFLIGTVAVAPTILKRKRIYE 277
           DLRSLRELYDSKTLVILFLIGTVAVAPTILKRKRIYE
Sbjct: 241 DLRSLRELYDSKTLVILFLIGTVAVAPTILKRKRIYE 277



>Os02g0693500 Conserved hypothetical protein
          Length = 281

 Score =  296 bits (759), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 137/218 (62%), Positives = 178/218 (81%), Gaps = 1/218 (0%)

Query: 57  GIFCVFRAAPRREFEQILRLPRSLADVRLLKDNLAVYARDYQANFILGYCSIYIFMQTFM 116
           G+  V+ + P  ++   L+LP++L ++++L D+L  Y  DY    ++GYC++YIFMQTFM
Sbjct: 51  GLVGVYLSMPHSDYS-FLKLPKNLQELQILTDHLEDYTSDYTVQVLVGYCAVYIFMQTFM 109

Query: 117 IPGTIFMSLLAGALFGVVKGGILVVFTATAGASSCYFVSKLIGRPLISWLWPEKLRYFQS 176
           IPGTIFMSLLAGALFG + G  LVVF ATAGASSCYF+SKLIG+PL+  LWP+KL +FQ 
Sbjct: 110 IPGTIFMSLLAGALFGQLGGVALVVFAATAGASSCYFLSKLIGKPLVFSLWPDKLGFFQK 169

Query: 177 EIAKRKEKLLNYMLFLRITPTLPNTFINMASPIVDIPFHIFFAATLIGLIPASYITVKAG 236
           ++AKR+EKLLNYMLFLR+TPTLPNTFIN+ASPIVD+P+HIFF AT IGLIPA+Y+TV+AG
Sbjct: 170 QVAKRREKLLNYMLFLRVTPTLPNTFINLASPIVDVPYHIFFLATFIGLIPAAYVTVRAG 229

Query: 237 RALGDLRSLRELYDSKTLVILFLIGTVAVAPTILKRKR 274
            ALGDL SL +LYD +++ +LFLIG V+V PT+L +  
Sbjct: 230 IALGDLSSLSDLYDKQSIALLFLIGVVSVTPTLLGKNE 267



>Os04g0592600 Conserved hypothetical protein
          Length = 306

 Score =  289 bits (740), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 135/217 (62%), Positives = 178/217 (82%), Gaps = 1/217 (0%)

Query: 61  VFRAAPRREFEQILRLPRSLADVRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGT 120
           V+ + P  ++   L+LPR+L ++++L  +L  Y  DY    ++GYCS+YIFMQTFMIPGT
Sbjct: 81  VYLSMPDSDY-SFLKLPRNLEELQILTGHLENYTSDYTIQVLVGYCSVYIFMQTFMIPGT 139

Query: 121 IFMSLLAGALFGVVKGGILVVFTATAGASSCYFVSKLIGRPLISWLWPEKLRYFQSEIAK 180
           IFMSLLAG+LFG ++G  LVVF A+AGASSC+F+SKLIG+PL+  LWP+KL +FQ ++AK
Sbjct: 140 IFMSLLAGSLFGQLRGVALVVFAASAGASSCFFLSKLIGKPLVFSLWPDKLMFFQKQVAK 199

Query: 181 RKEKLLNYMLFLRITPTLPNTFINMASPIVDIPFHIFFAATLIGLIPASYITVKAGRALG 240
           R+EKLLNYMLFLR+TPTLPNTFIN+ASPIVD+P+HIF  ATLIGLIPASY+TV+AG ALG
Sbjct: 200 RREKLLNYMLFLRVTPTLPNTFINLASPIVDVPYHIFLLATLIGLIPASYVTVRAGIALG 259

Query: 241 DLRSLRELYDSKTLVILFLIGTVAVAPTILKRKRIYE 277
           +L SL +LYD++++ +LFLIG V+V PT+L +    E
Sbjct: 260 ELTSLSDLYDTQSIALLFLIGIVSVTPTLLGKDEAQE 296



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.144    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,945,869
Number of extensions: 296832
Number of successful extensions: 698
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 3
Length of query: 277
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 178
Effective length of database: 11,866,615
Effective search space: 2112257470
Effective search space used: 2112257470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)